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Protein Overview: yu-PA, FBpp03008...

General Information:
Name(s) found: FBpp0300895 [FlyBase]
FBpp0300894 [FlyBase]
yu-PA / FBpp0070760 [FlyBase]
Description(s) found:
Found 40 descriptions.
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  • type=protein; loc=X:complement(5309006..5309074,5309355..5309488,5309561..5309951,5310223..5311386); ID=FBpp0300895; name=spoon-PE; parent=FBgn0263987,FBtr0308689; dbxref=FlyBase:FBpp0300895,FlyBase_Annotation_IDs:CG3249-PE,REFSEQ:NP_001245532,GB_protein:AFH07246; MD5=1302c8b0c889d19de9d4c5812f260d3a; length=585; release=r5.56; species=Dmel; [FlyBase]
  • type=protein; loc=X:complement(5309006..5309074,5309355..5309488,5309561..5309951,5310223..5311386); ID=FBpp0300894; name=spoon-PD; parent=FBgn0263987,FBtr0308688; dbxref=FlyBase:FBpp0300894,FlyBase_Annotation_IDs:CG3249-PD,REFSEQ:NP_726991,GB_protein:AAN09138; MD5=1302c8b0c889d19de9d4c5812f260d3a; length=585; release=r5.56; species=Dmel; [FlyBase]
  • The gene yu is referred to in FlyBase by the symbol Dmel\yu (CG3249, FBgn0029764). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is X:5307840..5314896. It has the cytological map location 4F9-4F10. Based on sequence similarity, it is predicted to have molecular function</span>: protein kinase A binding. There is experimental evidence that it is involved in the biological process</span>: long-term memory. 14 alleles are reported. The phenotype of these alleles is annotated with: intersegmental nerve. It has 3 annotated transcripts and 3 annotated polypeptides. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 585 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: long-term memory [IMP]
    protein localization [ISS]
    Molecular Function: RNA binding [IEA]
    protein kinase A binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSGRPLLYL SLPGVAFILG VFWFRRRYKN CLDKPDDEDS SAINDSSIEP TVQARKANGV  60
   61 LQNGKLPQQS ASKSMNINGT LVNGSGSGSG SSSDEKDSPT TMLYGKSAPI KIQSNGRTSN 120
  121 GKHQQQIDSE ILKSKIQDAE HKTLCSIDED FENLSSPRDL PDSVNTRVSF YNRKATQKTV 180
  181 EPVVIKATRT PKISPENSFL DTNYTNKECE QNNNCEPKEE PSKKEADQEE LEQDQEQTVL 240
  241 KEEVVDSNGN QKRNVDAASP SLSICSVQSG DSGKGSSLPR SEATRVKTTY EFLFPISLIG 300
  301 HLYGRKRAFI NQIKAKTLAS VSVGKNPYSG KVRICTIEGT ESEIDAALAM IRQRLPAKRY 360
  361 PNFTMQRIHF ALPQTIVPLS TESLYNLQLK LIEGINNDVV VSAVLSGSHI FIQHPLHPSH 420
  421 PSLPLLQKQL YDSYSTMEAP LLPSLELSAV CVIPINDVWY RVQIVDTDPE DEERCVIKFL 480
  481 DFGGYMNVGF NTLRQIRTDF MNVPFQSTEC ILSNIEPIGG TWSIEAAEIL NKLTKGIVLQ 540
  541 AQVAGYNSHN LPEIFLFASL GPNNVIFINK ELVGRKLAKW VEMSD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..168] PSI-BLAST 9.69897 No description for 1ztgA was found.
    2 View Details [169..374] PSI-BLAST 15.69897 Far upstream binding element, FBP, KH3 and KH4 domains
    3 View Details [375..585] PSI-BLAST 31.30103 No description for 2o4xA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  1.63535971389028 bayes_pls_golite062009
  • RNA binding
    		•  1.16361089268969 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.711581767271173 bayes_pls_golite062009
  • protein binding
    		•  0.427606060593007 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle