| Protein: | yu-PA, FBpp03008... |
| Organism: | Drosophila melanogaster |
| Length: | 585 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for yu-PA, FBpp03008....
| Description | E-value | Query Range |
Subject Range |
|
|
347.0 | [0..1] | [585..23] |
|
Region A: Residues: [1-168] |
1 11 21 31 41 51
| | | | | |
1 MVSGRPLLYL SLPGVAFILG VFWFRRRYKN CLDKPDDEDS SAINDSSIEP TVQARKANGV 60
61 LQNGKLPQQS ASKSMNINGT LVNGSGSGSG SSSDEKDSPT TMLYGKSAPI KIQSNGRTSN 120
121 GKHQQQIDSE ILKSKIQDAE HKTLCSIDED FENLSSPRDL PDSVNTRV
|
| Detection Method: |  |
| Confidence: | 9.69897 |
| Match: | 1ztgA |
| Description: | No description for 1ztgA was found. |
|
Region A: Residues: [169-374] |
1 11 21 31 41 51
| | | | | |
1 SFYNRKATQK TVEPVVIKAT RTPKISPENS FLDTNYTNKE CEQNNNCEPK EEPSKKEADQ 60
61 EELEQDQEQT VLKEEVVDSN GNQKRNVDAA SPSLSICSVQ SGDSGKGSSL PRSEATRVKT 120
121 TYEFLFPISL IGHLYGRKRA FINQIKAKTL ASVSVGKNPY SGKVRICTIE GTESEIDAAL 180
181 AMIRQRLPAK RYPNFTMQRI HFALPQ
|
| Detection Method: | |
| Confidence: | 15.69897 |
| Match: | 1j4wA |
| Description: | Far upstream binding element, FBP, KH3 and KH4 domains |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.63535971389028 | bayes_pls_golite062009 |
| RNA binding | 1.16361089268969 | bayes_pls_golite062009 |
| nucleic acid binding | 0.711581767271173 | bayes_pls_golite062009 |
| protein binding | 0.427606060593007 | bayes_pls_golite062009 |
|
Region A: Residues: [375-585] |
1 11 21 31 41 51
| | | | | |
1 TIVPLSTESL YNLQLKLIEG INNDVVVSAV LSGSHIFIQH PLHPSHPSLP LLQKQLYDSY 60
61 STMEAPLLPS LELSAVCVIP INDVWYRVQI VDTDPEDEER CVIKFLDFGG YMNVGFNTLR 120
121 QIRTDFMNVP FQSTECILSN IEPIGGTWSI EAAEILNKLT KGIVLQAQVA GYNSHNLPEI 180
181 FLFASLGPNN VIFINKELVG RKLAKWVEMS D
|
| Detection Method: | |
| Confidence: | 31.30103 |
| Match: | 2o4xA |
| Description: | No description for 2o4xA was found. |
