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Protein Overview: FBpp0308820

General Information:
Name(s) found: FBpp0308820 [FlyBase]
Description(s) found:
Found 22 descriptions.
SHOW ALL
  • type=protein; loc=X:join(1265341..1265403,1265484..1265807,1265948..1266055,1266119..1266300,1266494..1267080,1267191..1267384); ID=FBpp0308820; name=ssx-PD; parent=FBgn0024987,FBtr0339773; dbxref=FlyBase:FBpp0308820,FlyBase_Annotation_IDs:CG3056-PD; MD5=47466e169d263a55e72cb02ae0795b65; length=485; release=r5.56; species=Dmel; [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 485 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: nucleotide binding [IEA]
    RNA binding [IEA]
    mRNA binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNADKMQDQ EHDDEQSSDI EGSGDNVGRD DGTDDDDDSN GNMQQENGDG GNGGDGQEHS  60
   61 GDEEQHHSQD NEGNDNSAGQ QQQMQQVDRT SATNLIINYL PQDMTDRELY NLFSGCGPIN 120
  121 TCKIMRDFKT GYSFGYGFVD YKTESDSEDA IQKLNGFYVR NKRLKVSYAR PGGQSIKDTN 180
  181 LYVINLSRNI NDDMLDRIFS PYGLIVQRNI LRDKLTGRPR GVAFVRYNKR EEAQEAIKAL 240
  241 NNTVPEGGSQ PIWVRLAEEH GKAKAAQFMA QIGGGNGGGG GGPPHMGPGG PMHPPHHHNN 300
  301 HHHNNHHNPH MPPHHHQPQH PHQHPQHHPQ LHHMQHHHPN NHNNNHPNNH HHNNNNNNHH 360
  361 NMGGPHPHHM QQMHPMGMNM GMGVNMGMGM GMGMPIHGGG GGGGGGGGGG GGGNFHHMAH 420
  421 RGEVFMLPLP ICSRFPSQPH PVGNGICHSP NKNSRFRLSR RPQASRTTIR YIAHSVADPV 480
  481 PTPTT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..88] PSI-BLAST 31.522879 Poly(A)-binding protein
    2 View Details [89..277] PSI-BLAST 32.09691 Sex-lethal protein
    3 View Details [278..372] deduced N/A No confident structure predictions are available.
    4 View Details [373..485] PSI-BLAST 15.221849 poly(A) binding protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • RNA binding
    		•  3.75748736237159 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.30499161454806 bayes_pls_golite062009
  • mRNA binding
    		•  2.67679675039933 bayes_pls_golite062009
  • binding
    		•  2.30438455421982 bayes_pls_golite062009
    		• 0.84389121154917 bayes_pls_golite062009
  • single-stranded RNA binding
    		•  0.61170301639809 bayes_pls_golite062009
  • poly-pyrimidine tract binding
    		•  0.40943492051131 bayes_pls_golite062009
  • protein binding
    		•  0.403675976995418 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.361110886317161 bayes_pls_golite062009
  • mRNA 5'-UTR binding
    		•  0.18283446592068 bayes_pls_golite062009
  • DNA binding
    		•  0.139895000724487 bayes_pls_golite062009
  • translation repressor activity, nucleic acid binding
    		•  0.0860748299027598 bayes_pls_golite062009
    2
    Term Confidence Notes
  • RNA binding
    		•  3.75748736237159 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.30499161454806 bayes_pls_golite062009
  • mRNA binding
    		•  2.67679675039933 bayes_pls_golite062009
  • binding
    		•  2.30438455421982 bayes_pls_golite062009
    		• 0.84389121154917 bayes_pls_golite062009
  • single-stranded RNA binding
    		•  0.61170301639809 bayes_pls_golite062009
  • poly-pyrimidine tract binding
    		•  0.40943492051131 bayes_pls_golite062009
  • protein binding
    		•  0.403675976995418 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.361110886317161 bayes_pls_golite062009
  • mRNA 5'-UTR binding
    		•  0.18283446592068 bayes_pls_golite062009
  • DNA binding
    		•  0.139895000724487 bayes_pls_golite062009
  • translation repressor activity, nucleic acid binding
    		•  0.0860748299027598 bayes_pls_golite062009
    3 No functions predicted.
    4
    Term Confidence Notes
  • eukaryotic initiation factor 4G binding
    		•  3.42010690672168 bayes_pls_golite062009
  • RNA binding
    		•  2.72440026355875 bayes_pls_golite062009
  • mRNA binding
    		•  2.69217140436626 bayes_pls_golite062009
  • single-stranded RNA binding
    		•  2.18428706002465 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.17282382736847 bayes_pls_golite062009
  • poly(A) RNA binding
    		•  1.84786464421696 bayes_pls_golite062009
  • binding
    		•  1.42205067775429 bayes_pls_golite062009
  • poly-purine tract binding
    		•  1.35887811843216 bayes_pls_golite062009
  • catalytic activity
    		•  0.658135691360255 bayes_pls_golite062009
  • protein binding
    		•  0.137597344174086 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.41

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle