| Protein: | FBpp0308820 |
| Organism: | Drosophila melanogaster |
| Length: | 485 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0308820.
| Description | E-value | Query Range |
Subject Range |
|
|
296.0 | [0..3] | [470..101] |
|
Region A: Residues: [1-88] |
1 11 21 31 41 51
| | | | | |
1 MSNADKMQDQ EHDDEQSSDI EGSGDNVGRD DGTDDDDDSN GNMQQENGDG GNGGDGQEHS 60
61 GDEEQHHSQD NEGNDNSAGQ QQQMQQVD
|
| Detection Method: |  |
| Confidence: | 31.522879 |
| Match: | 1cvjA |
| Description: | Poly(A)-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 3.75748736237159 | bayes_pls_golite062009 |
| nucleic acid binding | 3.30499161454806 | bayes_pls_golite062009 |
| mRNA binding | 2.67679675039933 | bayes_pls_golite062009 |
| binding | 2.30438455421982 | bayes_pls_golite062009 |
| 0.84389121154917 | bayes_pls_golite062009 | |
| single-stranded RNA binding | 0.61170301639809 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 0.40943492051131 | bayes_pls_golite062009 |
| protein binding | 0.403675976995418 | bayes_pls_golite062009 |
| transcription regulator activity | 0.361110886317161 | bayes_pls_golite062009 |
| mRNA 5'-UTR binding | 0.18283446592068 | bayes_pls_golite062009 |
| DNA binding | 0.139895000724487 | bayes_pls_golite062009 |
| translation repressor activity, nucleic acid binding | 0.0860748299027598 | bayes_pls_golite062009 |
|
Region A: Residues: [89-277] |
1 11 21 31 41 51
| | | | | |
1 RTSATNLIIN YLPQDMTDRE LYNLFSGCGP INTCKIMRDF KTGYSFGYGF VDYKTESDSE 60
61 DAIQKLNGFY VRNKRLKVSY ARPGGQSIKD TNLYVINLSR NINDDMLDRI FSPYGLIVQR 120
121 NILRDKLTGR PRGVAFVRYN KREEAQEAIK ALNNTVPEGG SQPIWVRLAE EHGKAKAAQF 180
181 MAQIGGGNG
|
| Detection Method: | |
| Confidence: | 32.09691 |
| Match: | 3sxlA |
| Description: | Sex-lethal protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 3.75748736237159 | bayes_pls_golite062009 |
| nucleic acid binding | 3.30499161454806 | bayes_pls_golite062009 |
| mRNA binding | 2.67679675039933 | bayes_pls_golite062009 |
| binding | 2.30438455421982 | bayes_pls_golite062009 |
| 0.84389121154917 | bayes_pls_golite062009 | |
| single-stranded RNA binding | 0.61170301639809 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 0.40943492051131 | bayes_pls_golite062009 |
| protein binding | 0.403675976995418 | bayes_pls_golite062009 |
| transcription regulator activity | 0.361110886317161 | bayes_pls_golite062009 |
| mRNA 5'-UTR binding | 0.18283446592068 | bayes_pls_golite062009 |
| DNA binding | 0.139895000724487 | bayes_pls_golite062009 |
| translation repressor activity, nucleic acid binding | 0.0860748299027598 | bayes_pls_golite062009 |
|
Region A: Residues: [278-372] |
1 11 21 31 41 51
| | | | | |
1 GGGGGPPHMG PGGPMHPPHH HNNHHHNNHH NPHMPPHHHQ PQHPHQHPQH HPQLHHMQHH 60
61 HPNNHNNNHP NNHHHNNNNN NHHNMGGPHP HHMQQ
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [373-485] |
1 11 21 31 41 51
| | | | | |
1 MHPMGMNMGM GVNMGMGMGM GMPIHGGGGG GGGGGGGGGG GNFHHMAHRG EVFMLPLPIC 60
61 SRFPSQPHPV GNGICHSPNK NSRFRLSRRP QASRTTIRYI AHSVADPVPT PTT
|
| Detection Method: | |
| Confidence: | 15.221849 |
| Match: | 1g9lA |
| Description: | poly(A) binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| eukaryotic initiation factor 4G binding | 3.42010690672168 | bayes_pls_golite062009 |
| RNA binding | 2.72440026355875 | bayes_pls_golite062009 |
| mRNA binding | 2.69217140436626 | bayes_pls_golite062009 |
| single-stranded RNA binding | 2.18428706002465 | bayes_pls_golite062009 |
| nucleic acid binding | 2.17282382736847 | bayes_pls_golite062009 |
| poly(A) RNA binding | 1.84786464421696 | bayes_pls_golite062009 |
| binding | 1.42205067775429 | bayes_pls_golite062009 |
| poly-purine tract binding | 1.35887811843216 | bayes_pls_golite062009 |
| catalytic activity | 0.658135691360255 | bayes_pls_golite062009 |
| protein binding | 0.137597344174086 | bayes_pls_golite062009 |
