YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: CG3708-PA

General Information:
Name(s) found: CG3708-PA / FBpp0070183 [FlyBase]
Description(s) found:
SHOW ONLY BEST
  • gi|22831453|gb|AAF45565.2| CG3708 [Drosophila melanogaster] [NCBI NR]
  • gi|18543197|ref|NP_569871.1| CG3708 [Drosophila melanogaster] [NCBI NR]
  • gi|16183116|gb|AAL13631.1| GH17085p [Drosophila melanogaster] [NCBI NR]
  • gi|10190800|emb|CAB65874.1| EG:BACR7A4.18 [Drosophila melanogaster] [NCBI NR]
  • This gene is referred to in FlyBase by the symbol Dmel\CG3708 (CG3708, FBgn0040345). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is X:822825..824886. It has the cytological map location 1D2. Based on sequence similarity, it is predicted to have molecular function</span>: histone binding. Based on sequence similarity, it is predicted to be involved in the biological process</span>: nucleosome assembly. One allele is reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • >CG3708-PA translation from_gene[CG3708 EG:BACR7A4.18 FBgn0040345] seq_release:3 mol_weight=42894 cds_boundaries:(X:686,336..687,460[-]) aa_length:375 transcript_info:[CG3708-RA seq_release:3] gene_info:[gene symbol:EG:BACR7A4.18 FBgn0040345 gene_bound [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9U1L4) EG:BACR7A4.18 protein (GH17085P) (CG3708-PA) [DrosMelano7227.FASTAC.txt]
  • CG3708-PA [Drosophila melanogaster]gi|16183116|gb|AAL13631.1| GH17085p [Drosophila melanogaster]gi|18543197|ref|NP_569871.1| CG3708-PA [Drosophila melanogaster]gi|10190800|emb|CAB65874.1| EG:BACR7A4.18 [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=X:complement(822929..824056); ID=FBpp0070183; name=CG3708-PA; parent=FBgn0040345,FBtr0070190; dbxref=FlyBase:FBpp0070183,FlyBase_Annotation_IDs:CG3708-PA,GB_protein:AAF45565.2,REFSEQ:NP_569871,GB_protein:AAF45565; MD5=6d9fe22d9f72fd4df3e [fly-100309-contam.fasta]
  • CG3708-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • EG:BACR7A4.18 [Drosophila melanogaster] [nr-271106-contam.fasta]
  • GH17085p [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=X:complement(822929..824056); ID=FBpp0070183; name=CG3708-PA; parent=FBgn0040345,FBtr0070190; dbxref=FlyBase:FBpp0070183,FlyBase_Annotation_IDs:CG3708-PA,GB_protein:AAF45565.2,REFSEQ:NP_569871,GB_protein:AAF45565; MD5=6d9fe22d9f72fd4df3ed1b7e75f32505; length=375; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=X:complement(822929..824056); ID=FBpp0070183; name=CG3708-PA; parent=FBgn0040345,FBtr0070190; dbxref=FlyBase:FBpp0070183,FlyBase_Annotation_IDs:CG3708-PA,GB_protein:AAF45565.2,REFSEQ:NP_569871,GB_protein:AAF45565; MD5=6d9fe22d9f72fd4df3ed1b7e75f32505; length=375; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • CG3708 OS=Drosophila melanogaster GN=EG:BACR7A4.18 PE=1 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • CG3708 OS=Drosophila melanogaster GN=EG:BACR7A4.18 PE=2 SV=1 [UniProt_D_Melanogaster_07132012_07-13-2012_reversed.fasta]
    • Organism: Drosophila melanogaster
    Length: 375 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    Biological Process: nucleosome assembly [IEA][ISS]
    Molecular Function: histone binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPNFEVIAP NCTMIGMADS AEGVTQEDSH TESRADGISG SLRSLGTYTQ ESTEPALSPA  60
   61 DLPARSRKAF LRHMIGQLAE PVQNRIRALR HNQLQQVRIS EQFFREVYEL ERRFYGQSCA 120
  121 LFDARRDILE GSVEPPIQTE KTWPEDPQDA LYLDFGNNEE LRQLRQKLAP VSPTTLGVPR 180
  181 FWLTVFQNVP LLSELVQDHD EPLLESLMDV RLAYDQDSYM VIFQFRPNSF LHDSSLLLTK 240
  241 RYFLQHSADP EYPFLFEGPE IVRCEGCHIH WRDGSNLTLQ TVESRRRNRA HRVTKVMPRE 300
  301 SFFRFFAPPQ ALDLSLADEK TKLILGNDFE VGFLLRTQIV PKAVLFYTGD LVDSLSAASP 360
  361 DSRSLSSEAE QEQVL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..375] PSI-BLAST 54.522879 The structure of nucleosome assembly protein suggests a mechanism for histone binding and shuttling

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • histone binding
    		•  4.83364158381373 bayes_pls_golite062009
  • binding
    		•  2.67502047678266 bayes_pls_golite062009
  • DNA binding
    		•  1.77868687163103 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.77336286476068 bayes_pls_golite062009
  • protein binding
    		•  1.58681138679309 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.0196905966923535 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle