Protein Overview: RpL6-PB

General Information:
Name(s) found:	RpL6-PB / FBpp0085166 [FlyBase]
Description(s) found: Found 22 descriptions. SHOW ALL	The gene Ribosomal protein L6 is referred to in FlyBase by the symbol Dmel\RpL6 (CG11522, FBgn0039857). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:27420509..27421967. It has the cytological map location 100C7. An electronic pipeline based on InterPro domains suggests that it has the molecular function</span>: structural constituent of ribosome. There is experimental evidence that it is involved in the biological process</span>: mitotic spindle elongation; mitotic spindle organization. 3 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. [FlyBase]
Organism:	Drosophila melanogaster
Length:	262 amino acids
Gene Ontology:
Cellular Component:	lipid particle [IDA] cytosolic large ribosomal subunit [ISS]
Biological Process:	mitotic spindle elongation [IMP] mitotic spindle organization [IMP] translation [IEA]
Molecular Function:	structural constituent of ribosome [IEA]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPIEKAKKV AKSAKKGKKH PVNSYLKGGI LRYSKAQMYK RRALYRLKDK KSPVVEKAKV  60
   61 PIKKVKKIGG PKNGGERTVF LKKSKASYPT KTFVKKRPSK ANFSEHKRNT RRNLTPGTVL 120
  121 ILLAGRHQGK RVVLLKVLAS GLLLVTGPFA LNSCPLRRVS QRYVIGTSSK VDLGAFKVPE 180
  181 HLNDAYFRRL KAKKDKKTGE ADIFAAKKER FVPNEQRKKD QKEVDAALLK VIKAHPEGKF 240
  241 FAKYLQNMFA LHSSQYPHRM RF

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

SHOWING SINGLE HITS. [ Hide Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Searching the YRC Public Image Repository, found results:

Currently showing to of results.

[View Search in the YRC Public Image Repository]

Searching the YRC Public Image Repository, found no results.

Ginzu Version Information

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

Gene Ontology predictions

No functions predicted.

Term	Confidence	Notes
structural constituent of ribosome	9.75663213016935	bayes_pls_golite062009
structural molecule activity	9.17485893013108	bayes_pls_golite062009
translation elongation factor activity	2.80478779442574	bayes_pls_golite062009
transcription regulator activity	2.61378960730317	bayes_pls_golite062009
nucleic acid binding	2.37728600449241	bayes_pls_golite062009
DNA binding	1.96482107461071	bayes_pls_golite062009
binding	1.64219262839972	bayes_pls_golite062009
RNA binding	1.4457902513736	bayes_pls_golite062009
transcription factor activity	1.22903201558409	bayes_pls_golite062009
transcription elongation regulator activity	0.44970112534522	bayes_pls_golite062009
translation regulator activity	0.20179424040045	bayes_pls_golite062009
protein binding	0.196068293929372	bayes_pls_golite062009
translation factor activity, nucleic acid binding	0.177099375659271	bayes_pls_golite062009

Source: Reynolds et al. 2008. Manuscript submitted

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..92]	Pfam	26.853872	No description for PF03868.6 was found. No confident structure predictions are available.
2	View Details	[93..262]	PSI-BLAST	3.39794	No description for 2joyA was found.

Protein Overview: RpL6-PB

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: