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Protein Overview: CAP-D2-PA

General Information:
Name(s) found: CAP-D2-PA / FBpp0084818 [FlyBase]
Description(s) found:
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  • gi|7301805|gb|AAF56915.1| CAP-D2 condensin subunit [Drosophila melanogaster] [NCBI NR]
  • gi|24651092|ref|NP_651709.1| CAP-D2 condensin subunit [Drosophila melanogaster] [NCBI NR]
  • gi|21483440|gb|AAM52695.1| LD40412p [Drosophila melanogaster] [NCBI NR]
  • The gene CAP-D2 condensin subunit is referred to in FlyBase by the symbol Dmel\CAP-D2 (CG1911, FBgn0039680). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:25501398..25505985. It has the cytological map location 99B7. An electronic pipeline based on InterPro domains suggests that it has the molecular function</span>: binding. There is experimental evidence that it is involved in the biological process</span>: mitotic chromosome condensation; mitotic spindle organization. 4 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • >CG1911-PA translation from_gene[CG1911 CG1911 FBgn0039680] seq_release:3 mol_weight=157503 cds_boundaries:(3R:25,490,818..25,495,263[+]) aa_length:1380 transcript_info:[CG1911-RA seq_release:3] gene_info:[gene symbol:CG1911 FBgn0039680 gene_boundaries [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9VAJ1) CG1911 protein (LD40412p) [DrosMelano7227.FASTAC.txt]
  • (AE003770) CG1911 gene product [Drosophila melanogaster] [yeastflysequest.fasta]
  • CG1911-PA [Drosophila melanogaster]gi|21483440|gb|AAM52695.1| LD40412p [Drosophila melanogaster]gi|24651092|ref|NP_651709.1| CG1911-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=3R:join(25501452..25501578,25501656..25502127,25502188..25503083,25503144..25503285,25503341..25503428,25503483..25505900); ID=FBpp0084818; name=CAP-D2-PA; parent=FBgn0039680,FBtr0085452; dbxref=FlyBase:FBpp0084818,FlyBase_Annotation_IDs [fly-100309-contam.fasta]
  • LD40412p [Drosophila melanogaster] [nr-271106-contam.fasta]
  • CG1911-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • CAP-D2 condensin subunit CG1911-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=3R:join(25501452..25501578,25501656..25502127,25502188..25503083,25503144..25503285,25503341..25503428,25503483..25505900); ID=FBpp0084818; name=CAP-D2-PA; parent=FBgn0039680,FBtr0085452; dbxref=FlyBase:FBpp0084818,FlyBase_Annotation_IDs:CG1911-PA,GB_protein:AAF56915.1,REFSEQ:NP_651709,GB_protein:AAF56915; MD5=da5968cbe01e78bf2a8cbde7a7fd47ad; length=1380; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=3R:join(25501452..25501578,25501656..25502127,25502188..25503083,25503144..25503285,25503341..25503428,25503483..25505900); ID=FBpp0084818; name=CAP-D2-PA; parent=FBgn0039680,FBtr0085452; dbxref=FlyBase:FBpp0084818,FlyBase_Annotation_IDs:CG1911-PA,GB_protein:AAF56915.1,REFSEQ:NP_651709,GB_protein:AAF56915; MD5=da5968cbe01e78bf2a8cbde7a7fd47ad; length=1380; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • Condensin complex subunit 1 OS=Drosophila melanogaster GN=CAP-D2 PE=1 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=3R:join(25501452..25501578,25501656..25502127,25502188..25503083,25503144..25503285,25503341..25503428,25503483..25505900); ID=FBpp0084818; name=CAP-D2-PA; parent=FBgn0039680,FBtr0085452; dbxref=FlyBase:FBpp0084818,FlyBase_Annotation_IDs:CG1911-PA,GB_protein:AAF56915.1,REFSEQ:NP_651709,GB_protein:AAF56915,FlyMine:FBpp0084818,modMine:FBpp0084818; MD5=da5968cbe01e78bf2a8cbde7a7fd47ad; length=1380; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • Condensin complex subunit 1 OS=Drosophila melanogaster GN=CAP-D2 PE=2 SV=1 [UniProt_D_Melanogaster_07132012_07-13-2012_reversed.fasta]
  • type=protein; loc=3R:join(29675730..29675856,29675934..29676405,29676466..29677361,29677422..29677563,29677619..29677706,29677761..29680178); ID=FBpp0084818; name=Cap-D2-PA; parent=FBgn0039680,FBtr0085452; dbxref=FlyBase:FBpp0084818,FlyBase_Annotation_IDs:CG1911-PA,GB_protein:AAF56915.1,REFSEQ:NP_651709,GB_protein:AAF56915,FlyMine:FBpp0084818,modMine:FBpp0084818; MD5=da5968cbe01e78bf2a8cbde7a7fd47ad; length=1380; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=3R:join(29675730..29675856,29675934..29676405,29676466..29677361,29677422..29677563,29677619..29677706,29677761..29680178); ID=FBpp0084818; name=Cap-D2-PA; parent=FBgn0039680,FBtr0085452; dbxref=FlyBase:FBpp0084818,FlyBase_Annotation_IDs:CG1911-PA,GB_protein:AAF56915.1,REFSEQ:NP_651709,GB_protein:AAF56915,FlyMine:FBpp0084818,modMine:FBpp0084818; MD5=da5968cbe01e78bf2a8cbde7a7fd47ad; length=1380; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • Condensin complex subunit 1 OS=Drosophila melanogaster GN=Cap-D2 PE=1 SV=1 [DROME.fasta.20160308]
  • FBpp0084818 type=protein; loc=3R:join(29675730..29675856,29675934..29676405,29676466..29677361,29677422..29677563,29677619..29677706,29677761..29680178); ID=FBpp0084818; name=Cap-D2-PA; parent=FBgn0039680,FBtr0085452; dbxref=FlyBase:FBpp0084818,FlyBase_Annotation_IDs:CG1911-PA,GB_protein:AAF56915.1,REFSEQ:NP_651709,GB_protein:AAF56915,FlyMine:FBpp0084818,modMine:FBpp0084818; MD5=da5968cbe01e78bf2a8cbde7a7fd47ad; length=1380; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=3R:join(29675730..29675856,29675934..29676405,29676466..29677361,29677422..29677563,29677619..29677706,29677761..29680178); ID=FBpp0084818; name=Cap-D2-PA; parent=FBgn0039680,FBtr0085452; dbxref=FlyBase:FBpp0084818,FlyBase_Annotation_IDs:CG1911-PA,GB_protein:AAF56915.1,REFSEQ:NP_651709,GB_protein:AAF56915,UniProt/TrEMBL:Q9VAJ1,FlyMine:FBpp0084818,modMine:FBpp0084818; MD5=da5968cbe01e78bf2a8cbde7a7fd47ad; length=1380; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 1380 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    condensin complex [ISS]
    Biological Process: mitotic chromosome condensation [IMP]
    mitotic spindle organization [IMP]
    mitotic sister chromatid segregation [ISS]
    mitosis [ISS]
    Molecular Function: binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEESHDFQFV LPLNASDLIN SSGDQYYVKE IFGAQEIPAK LQECKRKVHL GDPFYIFEHF  60
   61 DLYYSIIEAR GSDGASAQNL MRSFDLLYLT VEKLFQDLQP LLTASEPMSN QQRNSYLNLT 120
  121 KMTLFLQVST VKKINNSVQQ AMRDQQLNVQ KKRAKPSEGL EQFPNWEVKR GKFLVQLFNV 180
  181 LQCPLEKLWS PPVAEEDFIN LLCDPCYRTI ELLPLRMDNK HVFDTIFQIL GTSIKRFNQA 240
  241 MTFPVRILQI LRGTEHAAHS VAAGILLLHE EYGISSVFSI LIKSIVDALR MDSSDSSVSK 300
  301 HFSNFLAEFS NIAPSLIVPH LEKLAEDLLD CQSHTLRNCV LQIIGDTVVS ELTSEDLSEE 360
  361 LKEVRNEFLE HLMAHILDIS AHVRSKVLSI WHHLKTQHAI PLNFLTRVLE EAIGRLEDKS 420
  421 SLVRRAAMHL IKSALESNPY SSKLSIDELR AKHEHEVQAM EKLNEVLEEE RKQEEKLNDE 480
  481 FSSLAPELLP FIEENLTEFP DMQFDKEESD ETLMERIIPL MREKNYKDVI VLVRKVDFLA 540
  541 GNQNMSSLLK HEEHCVYVLA LLKTYHLLAA GFKQSSEEML QQIKTVQFLK DSIDFAVLMT 600
  601 SAFPKLHEML MSKTNTDVFE AVDLFTTGYM FGIHGTESGM QRMLQLVWSS DKEKRDAVSD 660
  661 AYKRVLFSTD QTGRAHAIKV VQNLSKFLSE IEYGHYTALE SLMTEWVLGG DIDAAVIQVL 720
  721 FERFTLKLEG TTSNESRLSL QLLIMASQSK SSIVSANTAI IEDIAVGERV RRDPRIFTSC 780
  781 LQLLVNSIDA NNTAKYYKRQ NSDAEFVGKI TRLFLDFFFH RSLYDFDALA MSVFEYFYRM 840
  841 CQAPDVIAQQ LVTALLKQFN ESWLVKEAAA IVPSPDKADT ETVPDSQPLE IPHSQTLTPT 900
  901 QTQADSQSQM QGTLIPVYLV SRLIFCIGYM TIKEMIFLDM DIYNNMKYRD ELTALEERKN 960
  961 RNQQAGSSHN AARLTLNMSA MEVRKRLSGV AAEPQQEPDD DLVGATAEDN IAEEIHGICE1020
 1021 DMLLYNPDAL LSKLAPFIIE ICKRPGEFGD PTLQQAATLA LARLMTVSSR FCESNMSFLM1080
 1081 NILNLTKNIR IKCNTVVGLS DLTFRFPNII EPWTGHFYAQ LHESNTELRL TAVKMLSHLI1140
 1141 LNEMIRVKGQ IADMALCIVD GNEEIRNITK QFFKEIANKS NILYNVLPDI ISRLGDINLN1200
 1201 LDEDKYRIIM SYILGLIQKD RQIETLVEKL CLRFPVTRVE RQWRDIAYCL GLLTYNERAV1260
 1261 KKLMDNMQHY RDKVQVDEVY QSFKLIISNT NKLAKPELKA VVTEFENRLN ECLQVNPDTA1320
 1321 AQGDQESTPE GQGNRTRAAP RTKKGGRKPA ANRNNTVRGR GRRARRDSTS EESFSSSSSD1380
 1381

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..150] deduced N/A No confident structure predictions are available.
    2 View Details [151..253] deduced N/A No confident structure predictions are available.
    3 View Details [254..610] PSI-BLAST 18.69897 Crystal structure of Importin-beta and SREBP-2 complex
    4 View Details [611..730] deduced N/A No confident structure predictions are available.
    5 View Details [731..817] MSA 1.075995 View MSA. No confident structure predictions are available.
    6 View Details [818..977] deduced N/A No confident structure predictions are available.
    7 View Details [978..1380] PSI-BLAST 88.045757 Adaptin beta subunit N-terminal fragment

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.
    6 No functions predicted.
    7
    Term Confidence Notes
  • binding
    		•  2.91891696274037 bayes_pls_golite062009
  • protein binding
    		•  1.94427330399472 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  1.61037669901273 bayes_pls_golite062009
  • actin binding
    		•  0.891762677781115 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.169755106399802 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle