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Protein Overview: CG1646-PC, CG164...

General Information:
Name(s) found: CG1646-PE / FBpp0112211 [FlyBase]
CG1646-PC / FBpp0084694 [FlyBase]
CG1646-PA / FBpp0084692 [FlyBase]
Description(s) found:
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  • gi|7301703|gb|AAF56816.1| CG1646, isoform A [Drosophila melanogaster] [NCBI NR]
  • gi|28571914|ref|NP_788753.1| CG1646, isoform C [Drosophila melanogaster] [NCBI NR]
  • gi|28381484|gb|AAO41607.1| CG1646, isoform C [Drosophila melanogaster] [NCBI NR]
  • gi|21357975|ref|NP_651634.1| CG1646, isoform A [Drosophila melanogaster] [NCBI NR]
  • gi|161078719|ref|NP_001097957.1| CG1646, isoform E [Drosophila melanogaster] [NCBI NR]
  • gi|158030427|gb|ABW08793.1| CG1646, isoform E [Drosophila melanogaster] [NCBI NR]
  • gi|15291785|gb|AAK93161.1| LD26426p [Drosophila melanogaster] [NCBI NR]
  • This gene is referred to in FlyBase by the symbol Dmel\CG1646 (CG1646, FBgn0039600). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:24637826..24643076. It has the cytological map location 98E5. An electronic pipeline based on InterPro domains suggests that it has the molecular function</span>: heat shock protein binding. There is experimental evidence that it is involved in the biological process</span>: regulation of alternative nuclear mRNA splicing, via spliceosome. 4 alleles are reported. No phenotypic data is available. It has 6 annotated transcripts and 6 annotated polypeptides. [FlyBase]
  • >CG1646-PB translation from_gene[CG1646 CG1646 FBgn0039600] seq_release:3 mol_weight=114296 cds_boundaries:(3R:24,627,832..24,632,248[+]) aa_length:1009 transcript_info:[CG1646-RB seq_release:3] gene_info:[gene symbol:CG1646 FBgn0039600 gene_boundaries [hmr_yeast5_DM3-1_pombe.fasta]
  • >CG1646-PA translation from_gene[CG1646 CG1646 FBgn0039600] seq_release:3 mol_weight=114296 cds_boundaries:(3R:24,627,832..24,632,248[+]) aa_length:1009 transcript_info:[CG1646-RA seq_release:3] gene_info:[gene symbol:CG1646 FBgn0039600 gene_boundaries [hmr_yeast5_DM3-1_pombe.fasta]
  • >CG1646-PC translation from_gene[CG1646 CG1646 FBgn0039600] seq_release:3 mol_weight=114296 cds_boundaries:(3R:24,627,832..24,632,248[+]) aa_length:1009 transcript_info:[CG1646-RC seq_release:3] gene_info:[gene symbol:CG1646 FBgn0039600 gene_boundaries [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9VAT3) CG1646 protein (LD26426P) [DrosMelano7227.FASTAC.txt]
  • (AE003767) CG1646 gene product [Drosophila melanogaster] [yeastflysequest.fasta]
  • CG1646-PC, isoform C [Drosophila melanogaster]gi|7301703|gb|AAF56816.1| CG1646-PA, isoform A [Drosophila melanogaster]gi|15291785|gb|AAK93161.1| LD26426p [Drosophila melanogaster]gi|28571914|ref|NP_788753.1| CG1646-PC [Drosophila melanogaster]gi|21357 [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=3R:join(24638466..24639273,24639340..24639536,24639603..24639728,24640870..24641144,24641204..24642520,24642579..24642885); ID=FBpp0084692; name=CG1646-PA; parent=FBgn0039600,FBtr0085323; dbxref=FlyBase:FBpp0084692,FlyBase_Annotation_IDs [fly-100309-contam.fasta]
  • type=protein; loc=3R:join(24638466..24639273,24639340..24639536,24639603..24639728,24640870..24641144,24641204..24642520,24642579..24642885); ID=FBpp0084694; name=CG1646-PC; parent=FBgn0039600,FBtr0085325; dbxref=FlyBase:FBpp0084694,FlyBase_Annotation_IDs [fly-100309-contam.fasta]
  • type=protein; loc=3R:join(24638466..24639273,24639340..24639536,24639603..24639728,24640870..24641144,24641204..24642520,24642579..24642885); ID=FBpp0112211; name=CG1646-PE; parent=FBgn0039600,FBtr0113299; dbxref=FlyBase:FBpp0112211,FlyBase_Annotation_IDs [fly-100309-contam.fasta]
  • LD26426p [Drosophila melanogaster] [nr-271106-contam.fasta]
  • CG1646-PA, isoform A [Drosophila melanogaster] [nr-271106-contam.fasta]
  • CG1646-PC, isoform C [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=3R:join(24638466..24639273,24639340..24639536,24639603..24639728,24640870..24641144,24641204..24642520,24642579..24642885); ID=FBpp0084692; name=CG1646-PA; parent=FBgn0039600,FBtr0085323; dbxref=FlyBase:FBpp0084692,FlyBase_Annotation_IDs:CG1646-PA,GB_protein:AAF56816.1,REFSEQ:NP_651634,GB_protein:AAF56816; MD5=9beead5bba03204c223610722cad6dbc; length=1009; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=3R:join(24638466..24639273,24639340..24639536,24639603..24639728,24640870..24641144,24641204..24642520,24642579..24642885); ID=FBpp0084694; name=CG1646-PC; parent=FBgn0039600,FBtr0085325; dbxref=FlyBase:FBpp0084694,FlyBase_Annotation_IDs:CG1646-PC,GB_protein:AAO41607.1,REFSEQ:NP_788753,GB_protein:AAO41607; MD5=9beead5bba03204c223610722cad6dbc; length=1009; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=3R:join(24638466..24639273,24639340..24639536,24639603..24639728,24640870..24641144,24641204..24642520,24642579..24642885); ID=FBpp0112211; name=CG1646-PE; parent=FBgn0039600,FBtr0113299; dbxref=FlyBase:FBpp0112211,FlyBase_Annotation_IDs:CG1646-PE,REFSEQ:NP_001097957,GB_protein:ABW08793; MD5=9beead5bba03204c223610722cad6dbc; length=1009; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=3R:join(24638466..24639273,24639340..24639536,24639603..24639728,24640870..24641144,24641204..24642520,24642579..24642885); ID=FBpp0084692; name=CG1646-PA; parent=FBgn0039600,FBtr0085323; dbxref=FlyBase:FBpp0084692,FlyBase_Annotation_IDs:CG1646-PA,GB_protein:AAF56816.1,REFSEQ:NP_651634,GB_protein:AAF56816; MD5=9beead5bba03204c223610722cad6dbc; length=1009; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • type=protein; loc=3R:join(24638466..24639273,24639340..24639536,24639603..24639728,24640870..24641144,24641204..24642520,24642579..24642885); ID=FBpp0084694; name=CG1646-PC; parent=FBgn0039600,FBtr0085325; dbxref=FlyBase:FBpp0084694,FlyBase_Annotation_IDs:CG1646-PC,GB_protein:AAO41607.1,REFSEQ:NP_788753,GB_protein:AAO41607; MD5=9beead5bba03204c223610722cad6dbc; length=1009; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • type=protein; loc=3R:join(24638466..24639273,24639340..24639536,24639603..24639728,24640870..24641144,24641204..24642520,24642579..24642885); ID=FBpp0112211; name=CG1646-PE; parent=FBgn0039600,FBtr0113299; dbxref=FlyBase:FBpp0112211,FlyBase_Annotation_IDs:CG1646-PE,REFSEQ:NP_001097957,GB_protein:ABW08793; MD5=9beead5bba03204c223610722cad6dbc; length=1009; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • Isoform A of Pre-mRNA-processing factor 39 OS=Drosophila melanogaster GN=CG1646 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=3R:join(24638466..24639273,24639340..24639536,24639603..24639728,24640870..24641144,24641204..24642520,24642579..24642885); ID=FBpp0084692; name=CG1646-PA; parent=FBgn0039600,FBtr0085323; dbxref=FlyBase:FBpp0084692,FlyBase_Annotation_IDs:CG1646-PA,GB_protein:AAF56816.1,REFSEQ:NP_651634,GB_protein:AAF56816,FlyMine:FBpp0084692,modMine:FBpp0084692; MD5=9beead5bba03204c223610722cad6dbc; length=1009; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=3R:join(24638466..24639273,24639340..24639536,24639603..24639728,24640870..24641144,24641204..24642520,24642579..24642885); ID=FBpp0084694; name=CG1646-PC; parent=FBgn0039600,FBtr0085325; dbxref=FlyBase:FBpp0084694,FlyBase_Annotation_IDs:CG1646-PC,GB_protein:AAO41607.1,REFSEQ:NP_788753,GB_protein:AAO41607; MD5=9beead5bba03204c223610722cad6dbc; length=1009; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=3R:join(24638466..24639273,24639340..24639536,24639603..24639728,24640870..24641144,24641204..24642520,24642579..24642885); ID=FBpp0112211; name=CG1646-PE; parent=FBgn0039600,FBtr0113299; dbxref=FlyBase:FBpp0112211,FlyBase_Annotation_IDs:CG1646-PE,REFSEQ:NP_001097957,GB_protein:ABW08793; MD5=9beead5bba03204c223610722cad6dbc; length=1009; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=3R:join(28812744..28813551,28813618..28813814,28813881..28814006,28815148..28815422,28815482..28816798,28816857..28817163); ID=FBpp0084692; name=CG1646-PA; parent=FBgn0039600,FBtr0085323; dbxref=FlyBase:FBpp0084692,FlyBase_Annotation_IDs:CG1646-PA,GB_protein:AAF56816.1,REFSEQ:NP_651634,GB_protein:AAF56816,FlyMine:FBpp0084692,modMine:FBpp0084692; MD5=9beead5bba03204c223610722cad6dbc; length=1009; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=3R:join(28812744..28813551,28813618..28813814,28813881..28814006,28815148..28815422,28815482..28816798,28816857..28817163); ID=FBpp0084694; name=CG1646-PC; parent=FBgn0039600,FBtr0085325; dbxref=FlyBase:FBpp0084694,FlyBase_Annotation_IDs:CG1646-PC,GB_protein:AAO41607.1,REFSEQ:NP_788753,GB_protein:AAO41607; MD5=9beead5bba03204c223610722cad6dbc; length=1009; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=3R:join(28812744..28813551,28813618..28813814,28813881..28814006,28815148..28815422,28815482..28816798,28816857..28817163); ID=FBpp0112211; name=CG1646-PE; parent=FBgn0039600,FBtr0113299; dbxref=FlyBase:FBpp0112211,FlyBase_Annotation_IDs:CG1646-PE,REFSEQ:NP_001097957,GB_protein:ABW08793; MD5=9beead5bba03204c223610722cad6dbc; length=1009; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=3R:join(28812744..28813551,28813618..28813814,28813881..28814006,28815148..28815422,28815482..28816798,28816857..28817163); ID=FBpp0084692; name=CG1646-PA; parent=FBgn0039600,FBtr0085323; dbxref=FlyBase:FBpp0084692,FlyBase_Annotation_IDs:CG1646-PA,GB_protein:AAF56816.1,REFSEQ:NP_651634,GB_protein:AAF56816,FlyMine:FBpp0084692,modMine:FBpp0084692; MD5=9beead5bba03204c223610722cad6dbc; length=1009; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • type=protein; loc=3R:join(28812744..28813551,28813618..28813814,28813881..28814006,28815148..28815422,28815482..28816798,28816857..28817163); ID=FBpp0084694; name=CG1646-PC; parent=FBgn0039600,FBtr0085325; dbxref=FlyBase:FBpp0084694,FlyBase_Annotation_IDs:CG1646-PC,GB_protein:AAO41607.1,REFSEQ:NP_788753,GB_protein:AAO41607; MD5=9beead5bba03204c223610722cad6dbc; length=1009; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • type=protein; loc=3R:join(28812744..28813551,28813618..28813814,28813881..28814006,28815148..28815422,28815482..28816798,28816857..28817163); ID=FBpp0112211; name=CG1646-PE; parent=FBgn0039600,FBtr0113299; dbxref=FlyBase:FBpp0112211,FlyBase_Annotation_IDs:CG1646-PE,REFSEQ:NP_001097957,GB_protein:ABW08793; MD5=9beead5bba03204c223610722cad6dbc; length=1009; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • Isoform of Q7KRW8, Isoform A of Pre-mRNA-processing factor 39 OS=Drosophila melanogaster GN=CG1646 [DROME.fasta.20160308]
  • FBpp0084692 type=protein; loc=3R:join(28812744..28813551,28813618..28813814,28813881..28814006,28815148..28815422,28815482..28816798,28816857..28817163); ID=FBpp0084692; name=CG1646-PA; parent=FBgn0039600,FBtr0085323; dbxref=FlyBase:FBpp0084692,FlyBase_Annotation_IDs:CG1646-PA,GB_protein:AAF56816.1,REFSEQ:NP_651634,GB_protein:AAF56816,FlyMine:FBpp0084692,modMine:FBpp0084692; MD5=9beead5bba03204c223610722cad6dbc; length=1009; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • FBpp0084694 type=protein; loc=3R:join(28812744..28813551,28813618..28813814,28813881..28814006,28815148..28815422,28815482..28816798,28816857..28817163); ID=FBpp0084694; name=CG1646-PC; parent=FBgn0039600,FBtr0085325; dbxref=FlyBase:FBpp0084694,FlyBase_Annotation_IDs:CG1646-PC,GB_protein:AAO41607.1,REFSEQ:NP_788753,GB_protein:AAO41607; MD5=9beead5bba03204c223610722cad6dbc; length=1009; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • FBpp0112211 type=protein; loc=3R:join(28812744..28813551,28813618..28813814,28813881..28814006,28815148..28815422,28815482..28816798,28816857..28817163); ID=FBpp0112211; name=CG1646-PE; parent=FBgn0039600,FBtr0113299; dbxref=FlyBase:FBpp0112211,FlyBase_Annotation_IDs:CG1646-PE,REFSEQ:NP_001097957,GB_protein:ABW08793; MD5=9beead5bba03204c223610722cad6dbc; length=1009; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=3R:join(28812744..28813551,28813618..28813814,28813881..28814006,28815148..28815422,28815482..28816798,28816857..28817163); ID=FBpp0084692; name=CG1646-PA; parent=FBgn0039600,FBtr0085323; dbxref=FlyBase:FBpp0084692,FlyBase_Annotation_IDs:CG1646-PA,GB_protein:AAF56816.1,REFSEQ:NP_651634,GB_protein:AAF56816,FlyMine:FBpp0084692,modMine:FBpp0084692; MD5=9beead5bba03204c223610722cad6dbc; length=1009; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
  • type=protein; loc=3R:join(28812744..28813551,28813618..28813814,28813881..28814006,28815148..28815422,28815482..28816798,28816857..28817163); ID=FBpp0084694; name=CG1646-PC; parent=FBgn0039600,FBtr0085325; dbxref=FlyBase:FBpp0084694,FlyBase_Annotation_IDs:CG1646-PC,GB_protein:AAO41607.1,REFSEQ:NP_788753,GB_protein:AAO41607; MD5=9beead5bba03204c223610722cad6dbc; length=1009; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
  • type=protein; loc=3R:join(28812744..28813551,28813618..28813814,28813881..28814006,28815148..28815422,28815482..28816798,28816857..28817163); ID=FBpp0112211; name=CG1646-PE; parent=FBgn0039600,FBtr0113299; dbxref=FlyBase:FBpp0112211,FlyBase_Annotation_IDs:CG1646-PE,REFSEQ:NP_001097957,GB_protein:ABW08793; MD5=9beead5bba03204c223610722cad6dbc; length=1009; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 1009 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVQEEEEPFR GTNTAEAPAL EPQFEETQHQ IEDDVEMLPA EAAGVDEKSS SFPFGTVAEL  60
   61 HSETSDDIKE TRGQAGVDTL LASLAGDNAN SLPSVGGNDE SDNVKKADFE YNVDSLQPQM 120
  121 EKMNSSEDSS SQHAIAEDLA DADTSNATIV NTEIVSEDEL PLPSKPEIND AEEVSDEELP 180
  181 APQRAELPED AEVISEDELP ASNNNNTATE PKAPLKRKAE NESVKSTEDK DASSHESSTK 240
  241 DKSSEQYNPG SPTSESNDAQ PSEKKLKVEE SEPKEKKKEK ERDKDKEKDK DKDNNKDKEK 300
  301 ERKKLPDLDK YWRAVKEDST DFTGWTYLLQ YVDNESDAEA AREAYDTFLS HYPYCYGYWR 360
  361 KYADYEKRKG IKANCYKVFE RGLEAIPLSV DLWIHYLMHV KSNHGDDETF VRSQYERAVK 420
  421 ACGLEFRSDK LWDAYIRWEN ESKRYHRVVQ IYDRLLAIPT QGYNGHFDNF QDLINQHDVT 480
  481 ITLANEEVIR LRKDFHERQQ SKSSKSSSKH RRDSSSSSKD KDSKEREREK DKDKDKDKDK 540
  541 EKRETVGGGV GKSPKDTSET QVDESDSTTD LTTESESSHA ASKPAMQIDF SDLSTLNDEE 600
  601 VVSIRDRAIS ARRKVHKLTV SAVTARWSFE EGIKRPYFHV KPLERAQLKN WKDYLDFEIE 660
  661 KGDRERVLVL FERCLIACAL YDEFWLKMLR YLESLEDQSG VVDLVRDVYR RACRIHHPDK 720
  721 PSLHLMWAAF EECQMNFDDA AEILQRIDQR CPNLLQLSYR RINVERRRGA LDKCRELYKH 780
  781 YIESTKNKGI AGSLAIKYAR FLNKICHDLD AGLAALQQAL ERDPANTRVA LQMIDLCLQR 840
  841 PKVDEQEVVE IMDKFMARAD IEPDQKVLFA QRKVEFLEDF GSTARGLQDA QRALQQALTK 900
  901 AKEAQKKSDG SPSRKNSSSS KEGPVPTGSA AAAYNNGGSA AAVAGYNYGA ANPYYGQQNT 960
  961 AAAYPSQTPQ QASYDSYYNQ WGYGSGGASA NSGGSGYNYG QWSGYGNYY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..242] MSA 21.143997 View MSA. No confident structure predictions are available.
    2 View Details [243..303] deduced N/A No confident structure predictions are available.
    3 View Details [304..936] PSI-BLAST 34.522879 No description for 2ooeA was found.
    4 View Details [937..1009] MSA 2.211995 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • RNA binding
    		•  2.76684454218635 bayes_pls_golite062009
  • binding
    		•  2.71974493738804 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.10810725340025 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.03244296439384 bayes_pls_golite062009
  • DNA binding
    		•  1.77671451483154 bayes_pls_golite062009
  • protein binding
    		•  1.6279032205159 bayes_pls_golite062009
  • transcription factor activity
    		•  1.29089764676338 bayes_pls_golite062009
  • transcription factor binding
    		•  0.498051196281179 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.24203289043804 bayes_pls_golite062009
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle