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Protein Overview: RpI12-PA

General Information:
Name(s) found: RpI12-PA / FBpp0083564 [FlyBase]
Description(s) found:
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  • gi|7300774|gb|AAF55918.1| RpI12 [Drosophila melanogaster] [NCBI NR]
  • gi|216587887|gb|ACJ73151.1| GM14478p [Drosophila melanogaster] [NCBI NR]
  • gi|17738105|ref|NP_524439.1| RpI12 [Drosophila melanogaster] [NCBI NR]
  • The gene RpI12 is referred to in FlyBase by the symbol Dmel\RpI12 (CG13418, FBgn0038903). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:17602558..17603510. It has the cytological map location 93F9. Based on sequence similarity, it is predicted to have molecular function</span>: DNA-directed RNA polymerase activity. It is reported to be involved in the biological process</span>: transcription from RNA polymerase I promoter. 2 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • >CG13418-PA translation from_gene[CG13418 RpI12 FBgn0038903] seq_release:3 mol_weight=13630 cds_boundaries:(3R:17,593,978..17,594,452[-]) aa_length:120 transcript_info:[CG13418-RA seq_release:3] gene_info:[gene symbol:RpI12 FBgn0038903 gene_boundaries: [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9VD81) CG13418 protein [DrosMelano7227.FASTAC.txt]
  • (AE003736) CG13418 gene product [Drosophila melanogaster] [yeastflysequest.fasta]
  • CG13418-PA [Drosophila melanogaster]gi|17738105|ref|NP_524439.1| CG13418-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=3R:complement(17603011..17603035,17603100..17603319,17603371..17603488); ID=FBpp0083564; name=RpI12-PA; parent=FBgn0038903,FBtr0084166; dbxref=FlyBase:FBpp0083564,FlyBase_Annotation_IDs:CG13418-PA,GB_protein:AAF55918.1,REFSEQ:NP_524439,G [fly-100309-contam.fasta]
  • CG13418-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • RpI12 CG13418-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=3R:complement(17603011..17603035,17603100..17603319,17603371..17603488); ID=FBpp0083564; name=RpI12-PA; parent=FBgn0038903,FBtr0084166; dbxref=FlyBase:FBpp0083564,FlyBase_Annotation_IDs:CG13418-PA,GB_protein:AAF55918.1,REFSEQ:NP_524439,GB_protein:AAF55918; MD5=e4bd032ca693b65ab21959ffffebbc67; length=120; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=3R:complement(17603011..17603035,17603100..17603319,17603371..17603488); ID=FBpp0083564; name=RpI12-PA; parent=FBgn0038903,FBtr0084166; dbxref=FlyBase:FBpp0083564,FlyBase_Annotation_IDs:CG13418-PA,GB_protein:AAF55918.1,REFSEQ:NP_524439,GB_protein:AAF55918; MD5=e4bd032ca693b65ab21959ffffebbc67; length=120; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • DNA-directed RNA polymerase subunit OS=Drosophila melanogaster GN=RpI12 PE=1 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=3R:complement(17603011..17603035,17603100..17603319,17603371..17603488); ID=FBpp0083564; name=RpI12-PA; parent=FBgn0038903,FBtr0084166; dbxref=FlyBase:FBpp0083564,FlyBase_Annotation_IDs:CG13418-PA,GB_protein:AAF55918.1,REFSEQ:NP_524439,GB_protein:AAF55918,FlyMine:FBpp0083564,modMine:FBpp0083564; MD5=e4bd032ca693b65ab21959ffffebbc67; length=120; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • DNA-directed RNA polymerase subunit OS=Drosophila melanogaster GN=RpI12 PE=2 SV=1 [UniProt_D_Melanogaster_07132012_07-13-2012_reversed.fasta]
  • type=protein; loc=3R:complement(join(21777649..21777766,21777378..21777597,21777289..21777313)); ID=FBpp0083564; name=RpI12-PA; parent=FBgn0038903,FBtr0084166; dbxref=FlyBase:FBpp0083564,FlyBase_Annotation_IDs:CG13418-PA,GB_protein:AAF55918.1,REFSEQ:NP_524439,GB_protein:AAF55918,FlyMine:FBpp0083564,modMine:FBpp0083564; MD5=e4bd032ca693b65ab21959ffffebbc67; length=120; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=3R:complement(join(21777649..21777766,21777378..21777597,21777289..21777313)); ID=FBpp0083564; name=RpI12-PA; parent=FBgn0038903,FBtr0084166; dbxref=FlyBase:FBpp0083564,FlyBase_Annotation_IDs:CG13418-PA,GB_protein:AAF55918.1,REFSEQ:NP_524439,GB_protein:AAF55918,FlyMine:FBpp0083564,modMine:FBpp0083564; MD5=e4bd032ca693b65ab21959ffffebbc67; length=120; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • FBpp0083564 type=protein; loc=3R:complement(join(21777649..21777766,21777378..21777597,21777289..21777313)); ID=FBpp0083564; name=RpI12-PA; parent=FBgn0038903,FBtr0084166; dbxref=FlyBase:FBpp0083564,FlyBase_Annotation_IDs:CG13418-PA,GB_protein:AAF55918.1,REFSEQ:NP_524439,GB_protein:AAF55918,FlyMine:FBpp0083564,modMine:FBpp0083564; MD5=e4bd032ca693b65ab21959ffffebbc67; length=120; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=3R:complement(join(21777649..21777766,21777378..21777597,21777289..21777313)); ID=FBpp0083564; name=RpI12-PA; parent=FBgn0038903,FBtr0084166; dbxref=FlyBase:FBpp0083564,FlyBase_Annotation_IDs:CG13418-PA,GB_protein:AAF55918.1,REFSEQ:NP_524439,GB_protein:AAF55918,UniProt/TrEMBL:Q9VD81,FlyMine:FBpp0083564,modMine:FBpp0083564; MD5=e4bd032ca693b65ab21959ffffebbc67; length=120; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 120 amino acids

    Gene Ontology:
    Cellular Component: DNA-directed RNA polymerase I complex [ISS][NAS]
    Biological Process: transcription from RNA polymerase I promoter [NAS]
    regulation of transcription [IEA]
    Molecular Function: nucleic acid binding [IEA]
    zinc ion binding [IEA]
    DNA-directed RNA polymerase activity [ISS][NAS]
    transcription regulator activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIFSNCPGF CPSCGSILPE LQVKGNVICY NCKKEFQPDV YSGEKSEFTI HFNTYDPSKV  60
   61 FNRTKRESES DADGPVVERK CPKCNHDKMS YATLQLRSAD EGQTVFFTCL KCKFKESENS 120
  121

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..120] PSI-BLAST 20.221849 RBP9 subunit of RNA polymerase II


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

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