YRC Public Data Repository - Protein Structure Prediction

Protein:	RpI12-PA
Organism:	Drosophila melanogaster
Length:	120 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RpI12-PA.

Description	E-value	Query Range	Subject Range
gi\|116062375, gi... - gi\|118431049\|ref\|NP_147234.2\| transcription factor S [Aeropyrum pernix K1], gi\|116062375\|dbj\|BAA7940...	125.0	[0..10]	[119..7]
TFS_THECE - Transcription factor S OS=Thermococcus celer GN=tfs PE=1 SV=1	125.0	[0..10]	[119..3]
gi\|66735410 - gi\|66735410\|gb\|AAY53887.1\| DNA-dependent RNA polymerase subunit M [Thermococcus thioreducens]	124.0	[0..10]	[119..3]
gi\|44985907 - gi\|44985907\|gb\|AAS54518.1\| AGR029Wp [Ashbya gossypii ATCC 10895] gi\|45201124, gi\|... - gi\|45201124\|ref\|NP_986694.1\| AGR029Wp [Ashbya gossypii ATCC 10895], gi\|44985907\|gb\|AAS54518.1\| AGR02...	124.0	[0..9]	[119..3]
gi\|18893037, gi\|... - gi\|18977358\|ref\|NP_578715.1\| DNA-directed RNA polymerase subunit M [Pyrococcus furiosus DSM 3638], g...	124.0	[0..10]	[119..4]
gi\|73959879 - gi\|73959879\|ref\|XP_854405.1\| PREDICTED: similar to DNA-directed RNA polymerases III 12.5 kDa polypep...	123.0	[0..10]	[118..28]
gi\|5458798, gi\|7... - pir\|\|H75048 DNA-directed RNA polymerase (EC 2.7.7.6) chain M PAB1464 - Pyrococcus abyssi (strain Ors... gi\|5458798, gi\|1... - gi\|5458798\|emb\|CAB50285.1\| tfs archaeal transcription factor S [Pyrococcus abyssi GE5], gi\|14521579\|...	122.0	[0..10]	[119..4]
gi\|46438863, gi\|... - gi\|68477862\|ref\|XP_717083.1\| hypothetical protein CaO19.12820 [Candida albicans SC5314], gi\|68477699... orf19.12820, orf... - RPC11 CGDID:CAL0004345 Assembly 19, Contig19-10225 (127260, 127595) CDS, translated using codon tabl...	122.0	[0..10]	[119..4]
gi\|49645048, gi\|... - gi\|49645048\|emb\|CAG98620.1\| KLLA0F18568p [Kluyveromyces lactis], gi\|38636481\|emb\|CAD58583.1\| RNA pol... gi\|49645048, gi\|... - gi\|50311767\|ref\|XP_455912.1\| unnamed protein product [Kluyveromyces lactis], gi\|49645048\|emb\|CAG9862...	122.0	[0..9]	[119..3]

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Predicted Domain #1

Region A:
Residues: [1-120]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIFSNCPGF CPSCGSILPE LQVKGNVICY NCKKEFQPDV YSGEKSEFTI HFNTYDPSKV  60
   61 FNRTKRESES DADGPVVERK CPKCNHDKMS YATLQLRSAD EGQTVFFTCL KCKFKESENS 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.221849
Match:	1i3qI
Description:	RBP9 subunit of RNA polymerase II
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits