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Protein Overview: CG17838-PD

General Information:
Name(s) found: CG17838-PD / FBpp0083369 [FlyBase]
Description(s) found:
Found 18 descriptions.
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  • This gene is referred to in FlyBase by the symbol Dmel\CG17838 (CG17838, FBgn0038826). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:16582451..16631963. It has the cytological map location 92F12-93A1. Based on sequence similarity, it is predicted to have molecular function</span>: mRNA binding. The biological processes in which it is involved are not known. 22 alleles are reported. No phenotypic data is available. It has 8 annotated transcripts and 8 annotated polypeptides. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 707 amino acids

    Gene Ontology:
    Cellular Component: precatalytic spliceosome [IDA]
    heterogeneous nuclear ribonucleoprotein complex [ISS]
    Biological Process: nuclear mRNA splicing, via spliceosome [IC]
    Molecular Function: nucleotide binding [IEA]
    nucleic acid binding [IEA]
    mRNA binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSQMEASKV QKDEGGGEAL SRTILKTPSS FRTPSPIPSC SKMAEGNGEL LDDINQKADD  60
   61 RGDGERTEDY PKLLEYGLDK KVAGKLDEIY KTGKLAHAEL DERALDALKE FPVDGALNVL 120
  121 GQFLESNLEH VSNKSAYLCG VMKTYRQKSR ASQQGVAAPA TVKGPDEDKI KKILERTGYT 180
  181 LDVTTGQRKY GGPPPHWEGN VPGNGCEVFC GKIPKDMYED ELIPLFENCG IIWDLRLMMD 240
  241 PMTGTNRGYA FVTFTNREAA VNAVRQLDNH EIKPGKCLKI NISVPNLRLF VGNIPKSKGK 300
  301 DEILEEFGKL TAGLYEVIIY SSPDDKKKNR GFCFLEYESH KAASLAKRRL GTGRIKVWGC 360
  361 DIIVDWADPQ EEPDEQTMSK VKVLYVRNLT QDVSEDKLKE QFEQYGKVER VKKIKDYAFI 420
  421 HFEDRDSAVE AMRGLNGKEI GASNIEVSLA KPPSDKKKKE EILRARERRM MQMMQARPGI 480
  481 VGNLSPTHPS IMSLTPMRPG ARMPLRTPIP REYDYFYDFF GFSDYRQGGS FGNNVSYYDD 540
  541 MYRWIDGDYN YYDYPNGGGG GSGGGGGSVS GGTVLPLSAG GSQNSPMASG QRSARGSASG 600
  601 PSASPSLMGV GRGHGITVPR GRVVGQRGSI SRLGAQTVPQ AAGAAAAAGQ AAAAVAQRGA 660
  661 TGQGAPAATG GFRGVLPTRP SARGTQHVKP LQNLPAGAAF KTFMEGN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..197] MSA 2.180953 View MSA. No confident structure predictions are available.
    2 View Details [198..285] PSI-BLAST 12.09691 No description for 2dguA was found.
    3 View Details [286..366] PSI-BLAST 42.30103 Nuclear ribonucleoprotein A1 (RNP A1, UP1)
    4 View Details [367..497] FFAS03 3.47 Solution structure of the second RNA binding domain from hypothetical protein BAB23448
    5 View Details [498..549] deduced N/A No confident structure predictions are available.
    6 View Details [550..707] PSI-BLAST 6.0 Sec24

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4
    Term Confidence Notes
  • RNA binding
    		•  2.55209579427288 bayes_pls_golite062009
  • binding
    		•  2.12674248708253 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.64322098035939 bayes_pls_golite062009
  • mRNA binding
    		•  1.10126462659919 bayes_pls_golite062009
    5 No functions predicted.
    6 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle