| Protein: | CG17838-PD |
| Organism: | Drosophila melanogaster |
| Length: | 707 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG17838-PD.
| Description | E-value | Query Range |
Subject Range |
|
|
353.0 | [0..115] | [704..14] |
|
Region A: Residues: [1-197] |
1 11 21 31 41 51
| | | | | |
1 MLSQMEASKV QKDEGGGEAL SRTILKTPSS FRTPSPIPSC SKMAEGNGEL LDDINQKADD 60
61 RGDGERTEDY PKLLEYGLDK KVAGKLDEIY KTGKLAHAEL DERALDALKE FPVDGALNVL 120
121 GQFLESNLEH VSNKSAYLCG VMKTYRQKSR ASQQGVAAPA TVKGPDEDKI KKILERTGYT 180
181 LDVTTGQRKY GGPPPHW
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [198-285] |
1 11 21 31 41 51
| | | | | |
1 EGNVPGNGCE VFCGKIPKDM YEDELIPLFE NCGIIWDLRL MMDPMTGTNR GYAFVTFTNR 60
61 EAAVNAVRQL DNHEIKPGKC LKINISVP
|
| Detection Method: | |
| Confidence: | 12.09691 |
| Match: | 2dguA |
| Description: | No description for 2dguA was found. |
|
Region A: Residues: [286-366] |
1 11 21 31 41 51
| | | | | |
1 NLRLFVGNIP KSKGKDEILE EFGKLTAGLY EVIIYSSPDD KKKNRGFCFL EYESHKAASL 60
61 AKRRLGTGRI KVWGCDIIVD W
|
| Detection Method: | |
| Confidence: | 42.30103 |
| Match: | 1l3kA |
| Description: | Nuclear ribonucleoprotein A1 (RNP A1, UP1) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [367-497] |
1 11 21 31 41 51
| | | | | |
1 ADPQEEPDEQ TMSKVKVLYV RNLTQDVSED KLKEQFEQYG KVERVKKIKD YAFIHFEDRD 60
61 SAVEAMRGLN GKEIGASNIE VSLAKPPSDK KKKEEILRAR ERRMMQMMQA RPGIVGNLSP 120
121 THPSIMSLTP M
|
| Detection Method: | |
| Confidence: | 3.47 |
| Match: | 1whxA |
| Description: | Solution structure of the second RNA binding domain from hypothetical protein BAB23448 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 2.55209579427288 | bayes_pls_golite062009 |
| binding | 2.12674248708253 | bayes_pls_golite062009 |
| nucleic acid binding | 1.64322098035939 | bayes_pls_golite062009 |
| mRNA binding | 1.10126462659919 | bayes_pls_golite062009 |
|
Region A: Residues: [498-549] |
1 11 21 31 41 51
| | | | | |
1 RPGARMPLRT PIPREYDYFY DFFGFSDYRQ GGSFGNNVSY YDDMYRWIDG DY
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [550-707] |
1 11 21 31 41 51
| | | | | |
1 NYYDYPNGGG GGSGGGGGSV SGGTVLPLSA GGSQNSPMAS GQRSARGSAS GPSASPSLMG 60
61 VGRGHGITVP RGRVVGQRGS ISRLGAQTVP QAAGAAAAAG QAAAAVAQRG ATGQGAPAAT 120
121 GGFRGVLPTR PSARGTQHVK PLQNLPAGAA FKTFMEGN
|
| Detection Method: | |
| Confidence: | 6.0 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
