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Protein Overview: FBpp0302818, CG5...

General Information:
Name(s) found: FBpp0302818 [FlyBase]
CG5823-PA / FBpp0082929 [FlyBase]
Description(s) found:
Found 30 descriptions.
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  • type=protein; loc=3R:complement(13358442..13358921,13358982..13359052,13359345..13359645); ID=FBpp0302818; name=CG5823-PB; parent=FBgn0038515,FBtr0321266; dbxref=FlyBase:FBpp0302818,FlyBase_Annotation_IDs:CG5823-PB,REFSEQ:NP_001262669,GB_protein:AGB96049; MD5=5f1affda25183b8d29060bda5b15417b; length=283; release=r5.56; species=Dmel; [FlyBase]
  • This gene is referred to in FlyBase by the symbol Dmel\CG5823 (CG5823, FBgn0038515). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:13358041..13360297. It has the cytological map location 90B3. Based on sequence similarity, it is predicted to have molecular function</span>: ubiquitin-protein ligase activity. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process</span>: post-translational protein modification; regulation of protein metabolic process. 4 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 283 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: regulation of protein metabolic process [IEA]
    post-translational protein modification [IEA]
    Molecular Function: ubiquitin-protein ligase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSSTSGGR KQPTAVSRMK QDYMRLKRDP LPYITAEPLP NNILEWHYCV KGPEDSPYYG  60
   61 GYYHGTLLFP REFPFKPPSI YMLTPNGRFK TNTRLCLSIS DFHPDTWNPT WCVGTILTGL 120
  121 LSFMLESTPT LGSIESSNYD KQMFAQKSLA FNLRNTNFCE LFPEIVEEIK QRLRGTQAAA 180
  181 AVDGPAANGV KRSNGLANGA SLASADGNLA VGGLANPLNA ADAIDGGAAG QADLASGGGA 240
  241 AVQNSARNSY LNWQSVYSNL VIIICFAIFA LIVNYVIKNL NQE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..182] PSI-BLAST 42.154902 Human ubiquitin-conjugating enzyme E2 J2
    2 View Details [183..283] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • small conjugating protein ligase activity
    		•  0.767452414159677 bayes_pls_golite062009
  • ligase activity
    		•  0.629632458961638 bayes_pls_golite062009
  • ubiquitin-protein ligase activity
    		•  0.496332169470721 bayes_pls_golite062009
  • acid-amino acid ligase activity
    		•  0.399572899094766 bayes_pls_golite062009
  • catalytic activity
    		•  0.124974649117055 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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