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Protein Overview: ldlCp-PA

General Information:
Name(s) found: ldlCp-PA / FBpp0082568 [FlyBase]
Description(s) found:
Found 21 descriptions.
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  • The gene ldlCp-related protein is referred to in FlyBase by the symbol Dmel\ldlCp (CG6177, FBgn0026634). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:11184190..11187396. It has the cytological map location 88F1. Its molecular function is unknown. There is experimental evidence that it is involved in the biological process</span>: dsRNA transport. 2 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 710 amino acids

    Gene Ontology:
    Cellular Component: trans-Golgi network [ISS]
    membrane [IEA]
    Biological Process: Golgi organization [IEA]
    protein transport [IEA]
    intra-Golgi vesicle-mediated transport [ISS]
    exocytosis [ISS]
    dsRNA transport [IMP]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHDPVKKSAH LTAGSTSTAE KLCFDKNEFM KANFSVDEFL HKNRNAPSLE QLRDNLGLYL  60
   61 KGLRAAMIDL INEDYADFVN LSANLVGLDQ NIKTIQQPLE QFRSDIESIH GLIDENVTEL 120
  121 RAQLEEKRQL REFKRGLQSL KKVYETINKL QDLIDRKLSG EQPIKAVDLE RAALDLIQLK 180
  181 FHEKHCFKHL SPDHQGKIQQ LEEQLHQHLR RFFNDALSQA RNSAPESLER CLRIYITLNA 240
  241 CDQAECAFRE DVVAPYMTGV IGEQQLQNSP QGLAGIYSKI LNFISLHMTD LLRLTLYSDK 300
  301 FPGFNFVVNS YWSDVETRLE LHMNSIFAPG NSEVFYVKYK CTRDFLGKIE ELLTCSGEQA 360
  361 VTFYRQHKQT KSFEARWNLP VYFQICFQEI AGKFEAQLEP VLQEDSLKDN LTDSDYKISA 420
  421 FNAAKEAMTR CWAEGVYLPE VFPKFYKLNV QVVLRLSRWI TDAITQSKGS NFSKPYTRNQ 480
  481 LLIALHADIR KLDAHLPELQ QLIIKSVPVE QCTKIFSDVL AKSMSCLADT LGAHLTNIQK 540
  541 TLVELLIGEC ETENVRQVND LPRLYRKTNR EVPTRCSSYV EQMLRPLKAF AQQNESQLGT 600
  601 LVVEQILAEV ASHITKAYFN VVSDVLTSVQ KTEESLRRLR NVKSGGAATV STGSSAVMSD 660
  661 DDKIRVQLRV DVTSWRQELC KLNFQATQID KLVELTNMVE DSIKLKDNSA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..355] PSI-BLAST 14.39794 Heavy meromyosin subfragment
    2 View Details [356..512] deduced N/A No confident structure predictions are available.
    3 View Details [513..710] MSA 1.059981 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.89

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle