| Protein: | ldlCp-PA |
| Organism: | Drosophila melanogaster |
| Length: | 710 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ldlCp-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
611.0 | [0..1] | [710..1] |
|
Region A: Residues: [1-355] |
1 11 21 31 41 51
| | | | | |
1 MHDPVKKSAH LTAGSTSTAE KLCFDKNEFM KANFSVDEFL HKNRNAPSLE QLRDNLGLYL 60
61 KGLRAAMIDL INEDYADFVN LSANLVGLDQ NIKTIQQPLE QFRSDIESIH GLIDENVTEL 120
121 RAQLEEKRQL REFKRGLQSL KKVYETINKL QDLIDRKLSG EQPIKAVDLE RAALDLIQLK 180
181 FHEKHCFKHL SPDHQGKIQQ LEEQLHQHLR RFFNDALSQA RNSAPESLER CLRIYITLNA 240
241 CDQAECAFRE DVVAPYMTGV IGEQQLQNSP QGLAGIYSKI LNFISLHMTD LLRLTLYSDK 300
301 FPGFNFVVNS YWSDVETRLE LHMNSIFAPG NSEVFYVKYK CTRDFLGKIE ELLTC
|
| Detection Method: |  |
| Confidence: | 14.39794 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [356-512] |
1 11 21 31 41 51
| | | | | |
1 SGEQAVTFYR QHKQTKSFEA RWNLPVYFQI CFQEIAGKFE AQLEPVLQED SLKDNLTDSD 60
61 YKISAFNAAK EAMTRCWAEG VYLPEVFPKF YKLNVQVVLR LSRWITDAIT QSKGSNFSKP 120
121 YTRNQLLIAL HADIRKLDAH LPELQQLIIK SVPVEQC
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [513-710] |
1 11 21 31 41 51
| | | | | |
1 TKIFSDVLAK SMSCLADTLG AHLTNIQKTL VELLIGECET ENVRQVNDLP RLYRKTNREV 60
61 PTRCSSYVEQ MLRPLKAFAQ QNESQLGTLV VEQILAEVAS HITKAYFNVV SDVLTSVQKT 120
121 EESLRRLRNV KSGGAATVST GSSAVMSDDD KIRVQLRVDV TSWRQELCKL NFQATQIDKL 180
181 VELTNMVEDS IKLKDNSA
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
