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Protein Overview: CG9799-PA

General Information:
Name(s) found: CG9799-PA / FBpp0082231 [FlyBase]
Description(s) found:
Found 21 descriptions.
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  • This gene is referred to in FlyBase by the symbol Dmel\CG9799 (CG9799, FBgn0038146). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:9211360..9214429. It has the cytological map location 87E8. Its molecular function is unknown. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process</span>: rRNA processing. 2 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 922 amino acids

    Gene Ontology:
    Cellular Component: small-subunit processome [IEA]
    Biological Process: rRNA processing [IEA]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTHLRSEDKP QSEERKSVFK ESSCIFRRNR ALGYVSNQVP AVTRYVQRRR DTLLITCIGR  60
   61 SFQVYTANHF RLLHVSGLHP DEITALATDR LHTYTASNKC IYAWRAGKHI RHVYRGHQKD 120
  121 VHLLLPFGSS LIAIDRQNVL KVWNISTEDV YLEVPFRSEE FQITAVTHPP TYINKIVLGS 180
  181 QQGQLKILNI KKNSVVCTLS HHDSRITCIE PSPALDVVAV GHGDGTIILL NLKFDEVLMS 240
  241 FQQDWGQVTN LSFRTDGPPI LVSACSNGYM AFWNLEERKL AGQLQAHEES VTTAICLPSE 300
  301 PVVFTTSPDN SMRMFVFDMP DGGARQLRIR EGHTKPPFCI RYHGSSGVSI LSSGEDSTMR 360
  361 VFSTISESLN KSMGRATYNP KATKKKNRFE HDKFGMPPIL EFTSDTAREK EWDNIAAIHA 420
  421 GVIQTTTWSF GKNRMGEHRL VPKQFQNSNR TNFQNETTCI VLTHCGNFVI IGYSSGDIER 480
  481 FNIQSGLHRA TYGSPAHKMA VRGLASDNLN QTVISGCSEG LLKFWSFKGK VDKPLATLRL 540
  541 ADGIALIRQH RESSMLAIGL ETFKIFVVDM HTRVIVRKFV GHTAKLNDLT FSPDSRWLIT 600
  601 AAMDSTIKVW DIPSSYMVDH FRVEAPCVSL SMSPNGDFLA TAHVGLLGIY LWANKTLFNQ 660
  661 ISLRSIDPLE PAPYVGLPTN VCDAMELEDG MKELEIDEED ESKLGELVDT KYETPTQLSE 720
  721 ELITLSGLAA SRWQNLLDLE LIKQRNKPKA PPKAPKQAPF FLPTVSGLEL RFDVENGQKE 780
  781 EDESRIRKAS TLNNLTAFGQ LLEETADSLD FASAVAHLTQ LGPSMVDFEI KSLHPEAGGT 840
  841 LLAMLQFLKL VKFMFGTNLN FELAQSYLSV FLRSHGLGLT EFPDLVKELR TVSQVQQEAW 900
  901 QRVEEKLIYG TGVVAALRNF AH

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..613] PSI-BLAST 67.221849 Actin interacting protein 1
    2 View Details [614..748] PSI-BLAST 44.39794 Groucho/tle1, C-terminal domain
    3 View Details [749..922] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • snoRNA binding
    		•  6.03079504484743 bayes_pls_golite062009
    		• 3.41022148055944 bayes_pls_golite062009
  • RNA binding
    		•  3.0829625416797 bayes_pls_golite062009
  • binding
    		•  2.22722319261713 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  1.5283366007575 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.25687092973217 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.20712373307552 bayes_pls_golite062009
  • structural molecule activity
    		•  1.20572493724069 bayes_pls_golite062009
  • protein binding
    		•  1.11897341394404 bayes_pls_golite062009
  • actin binding
    		•  0.794986868016276 bayes_pls_golite062009
  • DNA binding
    		•  0.711274653406079 bayes_pls_golite062009
  • transcription factor activity
    		•  0.243992994917491 bayes_pls_golite062009
  • ligase activity
    		•  0.20682813699621 bayes_pls_golite062009
  • tubulin binding
    		•  0.0577116761374565 bayes_pls_golite062009
  • mRNA binding
    		•  0.0519838181830878 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.91

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle