YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: retinophilin-PA

General Information:
Name(s) found: retinophilin-PA / FBpp0078467 [FlyBase]
Description(s) found:
SHOW ONLY BEST
  • gi|85700964|gb|ABC74791.1| retinophilin [Drosophila melanogaster] [NCBI NR]
  • gi|84682943|gb|ABC61052.1| retinophilin [Drosophila melanogaster] [NCBI NR]
  • gi|7296779|gb|AAF52057.1| retinophilin, isoform A [Drosophila melanogaster] [NCBI NR]
  • gi|21356481|ref|NP_649520.1| retinophilin, isoform A [Drosophila melanogaster] [NCBI NR]
  • gi|16767920|gb|AAL28178.1| GH04877p [Drosophila melanogaster] [NCBI NR]
  • The gene retinophilin is referred to in FlyBase by the symbol Dmel\retinophilin (CG10233, FBgn0087005). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:1061812..1063038. It has the cytological map location 82F6. Its molecular function is unknown. There is experimental evidence that it is involved in the biological process</span>: engulfment of apoptotic cell. 2 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. [FlyBase]
  • >CG10233-PA translation from_gene[CG10233 CG10233 FBgn0037302] seq_release:3 mol_weight=22739 cds_boundaries:(3R:1,062,121..1,062,978[-]) aa_length:198 transcript_info:[CG10233-RA seq_release:3] gene_info:[gene symbol:CG10233 FBgn0037302 gene_boundarie [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9VN91) CG10233 protein (GH04877P) [DrosMelano7227.FASTAC.txt]
  • (AE003603) CG10233 gene product [Drosophila melanogaster] [yeastflysequest.fasta]
  • CG10233-PA, isoform A [Drosophila melanogaster]gi|16767920|gb|AAL28178.1| GH04877p [Drosophila melanogaster]gi|21356481|ref|NP_649520.1| CG10233-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=3R:complement(1062121..1062388,1062595..1062895,1062954..1062981); ID=FBpp0078467; name=retinophilin-PA; parent=FBgn0087005,FBtr0078825; dbxref=FlyBase:FBpp0078467,FlyBase_Annotation_IDs:CG10233-PA,GB_protein:AAF52057.1,REFSEQ:NP_649520, [fly-100309-contam.fasta]
  • CG10233-PA, isoform A [Drosophila melanogaster] [nr-271106-contam.fasta]
  • GH04877p [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=3R:complement(1062121..1062388,1062595..1062895,1062954..1062981); ID=FBpp0078467; name=retinophilin-PA; parent=FBgn0087005,FBtr0078825; dbxref=FlyBase:FBpp0078467,FlyBase_Annotation_IDs:CG10233-PA,GB_protein:AAF52057.1,REFSEQ:NP_649520,GB_protein:AAF52057; MD5=93fd6c8a8a06f4bcaf26f4f69b5b5725; length=198; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=3R:complement(1062121..1062388,1062595..1062895,1062954..1062981); ID=FBpp0078467; name=retinophilin-PA; parent=FBgn0087005,FBtr0078825; dbxref=FlyBase:FBpp0078467,FlyBase_Annotation_IDs:CG10233-PA,GB_protein:AAF52057.1,REFSEQ:NP_649520,GB_protein:AAF52057; MD5=93fd6c8a8a06f4bcaf26f4f69b5b5725; length=198; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • GH04877p OS=Drosophila melanogaster GN=rtp PE=1 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=3R:complement(1062121..1062388,1062595..1062895,1062954..1062981); ID=FBpp0078467; name=rtp-PA; parent=FBgn0087005,FBtr0078825; dbxref=FlyBase:FBpp0078467,FlyBase_Annotation_IDs:CG10233-PA,GB_protein:AAF52057.1,REFSEQ:NP_649520,GB_protein:AAF52057,FlyMine:FBpp0078467,modMine:FBpp0078467; MD5=93fd6c8a8a06f4bcaf26f4f69b5b5725; length=198; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • GH04877p OS=Drosophila melanogaster GN=rtp PE=2 SV=1 [UniProt_D_Melanogaster_07132012_07-13-2012_reversed.fasta]
  • type=protein; loc=3R:complement(join(5237232..5237259,5236873..5237173,5236399..5236666)); ID=FBpp0078467; name=rtp-PA; parent=FBgn0087005,FBtr0078825; dbxref=FlyBase:FBpp0078467,FlyBase_Annotation_IDs:CG10233-PA,GB_protein:AAF52057.1,REFSEQ:NP_649520,GB_protein:AAF52057,FlyMine:FBpp0078467,modMine:FBpp0078467; MD5=93fd6c8a8a06f4bcaf26f4f69b5b5725; length=198; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=3R:complement(join(5237232..5237259,5236873..5237173,5236399..5236666)); ID=FBpp0078467; name=rtp-PA; parent=FBgn0087005,FBtr0078825; dbxref=FlyBase:FBpp0078467,FlyBase_Annotation_IDs:CG10233-PA,GB_protein:AAF52057.1,REFSEQ:NP_649520,GB_protein:AAF52057,FlyMine:FBpp0078467,modMine:FBpp0078467; MD5=93fd6c8a8a06f4bcaf26f4f69b5b5725; length=198; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • FBpp0078467 type=protein; loc=3R:complement(join(5237232..5237259,5236873..5237173,5236399..5236666)); ID=FBpp0078467; name=rtp-PA; parent=FBgn0087005,FBtr0078825; dbxref=FlyBase:FBpp0078467,FlyBase_Annotation_IDs:CG10233-PA,GB_protein:AAF52057.1,REFSEQ:NP_649520,GB_protein:AAF52057,FlyMine:FBpp0078467,modMine:FBpp0078467; MD5=93fd6c8a8a06f4bcaf26f4f69b5b5725; length=198; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=3R:complement(join(5237232..5237259,5236873..5237173,5236399..5236666)); ID=FBpp0078467; name=rtp-PA; parent=FBgn0087005,FBtr0078825; dbxref=FlyBase:FBpp0078467,FlyBase_Annotation_IDs:CG10233-PA,GB_protein:AAF52057.1,REFSEQ:NP_649520,GB_protein:AAF52057,UniProt/TrEMBL:Q9VN91,FlyMine:FBpp0078467,modMine:FBpp0078467; MD5=93fd6c8a8a06f4bcaf26f4f69b5b5725; length=198; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 198 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: engulfment of apoptotic cell [IMP]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMDDYDDDM SSVGVTTARI ENQHQQHPHQ QGQHGHHQQG QGQSQYSAGA VKVGGWRYED  60
   61 ASRYIGEWNQ RGQKHGIGHL QFADGTRYDG QFQEGLSQGV GCLWFADGAK YEGEFHQGWF 120
  121 HGNGIFWRAD GMKYEGEFRG GKIWGLGLLT FQDFTHGFPR NEGFFQDCRF MRRRRCPEVV 180
  181 QRAQKCALMA RSQCEHPY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..198] PSI-BLAST 13.69897 Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain; Histone H3 K4-specific methyltransferase SET7/9 catalytic domain


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle