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Protein Overview: CG9772-PC

General Information:
Name(s) found: CG9772-PC / FBpp0078594 [FlyBase]
Description(s) found:
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  • gi|28573256|ref|NP_649457.3| CG9772, isoform C [Drosophila melanogaster] [NCBI NR]
  • gi|28381119|gb|AAN13305.2| CG9772, isoform C [Drosophila melanogaster] [NCBI NR]
  • gi|16768620|gb|AAL28529.1| GM13370p [Drosophila melanogaster] [NCBI NR]
  • This gene is referred to in FlyBase by the symbol Dmel\CG9772 (CG9772, FBgn0037236). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:161143..165287. It has the cytological map location 82A4. Its molecular function is unknown. Based on sequence similarity, it is predicted to be involved in the biological process</span>: ubiquitin-dependent protein catabolic process. 4 alleles are reported. No phenotypic data is available. It has 4 annotated transcripts and 4 annotated polypeptides. [FlyBase]
  • >CG9772-PC translation from_gene[CG9772 CG9772 FBgn0037236] seq_release:3 mol_weight=34428 cds_boundaries:(3R:162,178..163,327[-]) aa_length:315 transcript_info:[CG9772-RC seq_release:3] gene_info:[gene symbol:CG9772 FBgn0037236 gene_boundaries:(3R:161 [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q95S27) GM13370p (CG9772-PC) [DrosMelano7227.FASTAC.txt]
  • CG9772-PC, isoform C [Drosophila melanogaster]gi|16768620|gb|AAL28529.1| GM13370p [Drosophila melanogaster]gi|28573256|ref|NP_649457.3| CG9772-PC [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=3R:complement(162176..163064,163270..163328); ID=FBpp0078594; name=CG9772-PC; parent=FBgn0037236,FBtr0078954; dbxref=FlyBase:FBpp0078594,FlyBase_Annotation_IDs:CG9772-PC,GB_protein:AAN13305.2,REFSEQ:NP_649457,GB_protein:AAN13305; MD5=d2f [fly-100309-contam.fasta]
  • CG9772-PC, isoform C [Drosophila melanogaster] [nr-271106-contam.fasta]
  • GM13370p [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=3R:complement(162176..163064,163270..163328); ID=FBpp0078594; name=CG9772-PC; parent=FBgn0037236,FBtr0078954; dbxref=FlyBase:FBpp0078594,FlyBase_Annotation_IDs:CG9772-PC,GB_protein:AAN13305.2,REFSEQ:NP_649457,GB_protein:AAN13305; MD5=d2f5d631e8fb9fbc6298718fd5a92bac; length=315; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=3R:complement(162176..163064,163270..163328); ID=FBpp0078594; name=CG9772-PC; parent=FBgn0037236,FBtr0078954; dbxref=FlyBase:FBpp0078594,FlyBase_Annotation_IDs:CG9772-PC,GB_protein:AAN13305.2,REFSEQ:NP_649457,GB_protein:AAN13305; MD5=d2f5d631e8fb9fbc6298718fd5a92bac; length=315; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • CG9772, isoform C OS=Drosophila melanogaster GN=CG9772 PE=2 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=3R:complement(162176..163064,163270..163328); ID=FBpp0078594; name=Skp2-PC; parent=FBgn0037236,FBtr0078954; dbxref=FlyBase:FBpp0078594,FlyBase_Annotation_IDs:CG9772-PC,GB_protein:AAN13305.2,REFSEQ:NP_649457,GB_protein:AAN13305,FlyMine:FBpp0078594,modMine:FBpp0078594; MD5=d2f5d631e8fb9fbc6298718fd5a92bac; length=315; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
    • Organism: Drosophila melanogaster
    Length: 315 amino acids

    Gene Ontology:
    Cellular Component: SCF ubiquitin ligase complex [ISS]
    Biological Process: ubiquitin-dependent protein catabolic process [ISS]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSRKHRGSE NMENLCPVTR KRSTNKNHVS VVGALVSTTK SSHYEHPSSP SALTFEALEE  60
   61 MGIGMLDSEE SSSSALSAIA LAVSATSDDN SNETTPCASV SRMAHQLQHT QRLSLGSTGD 120
  121 ITLDSPAVED SLSMSRQSAE KLQILAQAKR SSLGSEGSGN SNSPSKRLRN PLAAVTCNNQ 180
  181 IDGTASLNFQ PSTSRLAQVR QAKKPSTTNI TTRIVAADSF FVFRTPAMSA HINSGINYFE 240
  241 RLSDEILLDI FKWLPKKTLL RMATVCRRFN RCSRDETLWT RLDLGLRTIR PGALEQIVRR 300
  301 GVLVIRLAQT SVSYI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..230] MSA 3.121996 View MSA. No confident structure predictions are available.
    2 View Details [231..315] PSI-BLAST 18.522879 Skp2; Cyclin A/CDK2-associated p19, Skp2


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle