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Protein Overview: CG9772-PA, FBpp0...

General Information:
Name(s) found: FBpp0311072 [FlyBase]
CG9772-PA / FBpp0078593 [FlyBase]
Description(s) found:
Found 23 descriptions.
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  • type=protein; loc=3R:complement(161265..161451,161508..161667,161731..162130,162191..163064,163270..163328); ID=FBpp0311072; name=Skp2-PE; parent=FBgn0037236,FBtr0344740; dbxref=FlyBase:FBpp0311072,FlyBase_Annotation_IDs:CG9772-PE; MD5=9c10ff2be1683ad5e8854a00667312af; length=559; release=r5.56; species=Dmel; [FlyBase]
  • This gene is referred to in FlyBase by the symbol Dmel\CG9772 (CG9772, FBgn0037236). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:161143..165287. It has the cytological map location 82A4. Its molecular function is unknown. Based on sequence similarity, it is predicted to be involved in the biological process</span>: ubiquitin-dependent protein catabolic process. 4 alleles are reported. No phenotypic data is available. It has 4 annotated transcripts and 4 annotated polypeptides. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 559 amino acids

    Gene Ontology:
    Cellular Component: SCF ubiquitin ligase complex [ISS]
    Biological Process: ubiquitin-dependent protein catabolic process [ISS]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSRKHRGSE NMENLCPVTR KRSTNKNHVS VVGALVSTTK SSHYEHPSSP SALTFEALEE  60
   61 MGIGMLDSEE SSSSALSAIA LAVSATSDDN SNETTPCASV SRMAHQLQHT QRLSLGSTGD 120
  121 ITLDSPAVED SLSMSRQSAE KLQILAQAKR SSLGSEGSGN SNSPSKRLRN PLAAVTCNNQ 180
  181 IDGTASLNFQ PSTSRLAQVR QAKKPSTTNI TTRIVAADSF FVFRTPAMSA HINSGINYFE 240
  241 RLSDEILLDI FKWLPKKTLL RMATVCRRFN RCSRDETLWT RLDLGLRTIR PGALEQIVRR 300
  301 GVLVIRLAQT SIQEPAFAPY TEVFRTRLQY LDLSMASITR SSLLTLLSHC RQLKKISLEN 360
  361 IELDDDICAE IAKNEALEAV NLTMASGLTS NSVRLMMESL TSLSSLNISW TDLSADAVTA 420
  421 LVTHISPNLI RLNIAGCRRV LFDSHVATLQ KRCPQLLELD LSDCNSLTPT VITAIMKFKM 480
  481 LEYLSVSRCY LIPATKFIEL KSMPSLTYLD IFGMLSDTAM EVLEKQLPKM GINKFIHSSV 540
  541 SRPTVGTRRT SIWGLRTRD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..112] MSA 4.544995 View MSA. No confident structure predictions are available.
    2 View Details [113..453] PSI-BLAST 7.154902 Leucine rich effector protein YopM
    3 View Details [454..559] PSI-BLAST 22.221849 Skp2; Cyclin A/CDK2-associated p19, Skp2

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  1.23313855731605 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.710443686489925 bayes_pls_golite062009
  • protein binding
    		•  0.646159692466759 bayes_pls_golite062009
  • receptor activity
    		•  0.269916678721535 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle