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Protein Overview: sa-PA

General Information:
Name(s) found: sa-PA / FBpp0078055 [FlyBase]
Description(s) found:
Found 22 descriptions.
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  • The gene spermatocyte arrest is referred to in FlyBase by the symbol Dmel\sa (CG11308, FBgn0002842). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3L:21398611..21399796. It has the cytological map location 78D1. Its molecular function is unknown. There is experimental evidence that it is involved in the biological process</span>: male meiosis I; spermatogenesis. 8 alleles are reported. The phenotypes of these alleles are annotated with: testis; spermatocyte. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 275 amino acids

    Gene Ontology:
    Cellular Component: nucleolus [IDA]
    Biological Process: spermatid development [TAS]
    spermatogenesis [IMP]
    male meiosis I [IMP]
    meiosis [TAS]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTYDEVLAT VLDNLLASKN CEVVDDVLRQ SMLELLRGKF REIARQTTNW SNHAGRCAPS  60
   61 YFDLERTFIR MNIKVGELKA MYEGQPDSLV LVECNAPETQ DQDFHSVPQP VLSSTKAVEL 120
  121 ASTTYIPDHL PPFPGAHTYK SSTIEKVTDR SYVAMRNRHA ENELNTQNAL NQYYLRCNPN 180
  181 ISLFEETQRD GSGHVLDLGP PKKLPYSDAL MPRNQVFDTD IYAPIEVITH KALDCRYLEK 240
  241 PKLHSSRPSS GNFEEEDVEM EEPCSPGGLG IEKPN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..70] PSI-BLAST 8.0 TAF(II)42
    2 View Details [71..137] MSA 5.100995 View MSA. No confident structure predictions are available.
    3 View Details [138..275] MSA 1.045956 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  2.83833760498314 bayes_pls_golite062009
  • DNA binding
    		•  2.20605244773121 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.77431079461635 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  1.15400380806529 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  1.10286842697456 bayes_pls_golite062009
  • protein binding
    		•  1.10166468462827 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.07001118921201 bayes_pls_golite062009
  • transcription factor activity
    		•  0.77822926904752 bayes_pls_golite062009
  • transcription activator activity
    		•  0.44852364509666 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.07646821147831 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle