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Protein Overview: Pop2-PC, Pop2-PB

General Information:
Name(s) found: Pop2-PC / FBpp0075792 [FlyBase]
Pop2-PB / FBpp0075791 [FlyBase]
Description(s) found:
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  • gi|25013016|gb|AAN71594.1| RH51274p [Drosophila melanogaster] [NCBI NR]
  • gi|24663080|ref|NP_729776.1| Pop2, isoform C [Drosophila melanogaster] [NCBI NR]
  • gi|24663076|ref|NP_729775.1| Pop2, isoform B [Drosophila melanogaster] [NCBI NR]
  • gi|23096144|gb|AAN12249.1| Pop2, isoform C [Drosophila melanogaster] [NCBI NR]
  • gi|23096143|gb|AAN12248.1| Pop2, isoform B [Drosophila melanogaster] [NCBI NR]
  • The gene Pop2 is referred to in FlyBase by the symbol Dmel\Pop2 (CG5684, FBgn0036239). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3L:11991498..11996013. It has the cytological map location 68F1. Based on sequence similarity, it is predicted to have molecular function</span>: general RNA polymerase II transcription factor activity. There is experimental evidence that it is involved in the biological process</span>: neuron development; muscle organ development; nuclear-transcribed mRNA poly(A) tail shortening. 5 alleles are reported. No phenotypic data is available. It has 4 annotated transcripts and 4 annotated polypeptides. [FlyBase]
  • >CG5684-PB translation from_gene[CG5684 CG5684 FBgn0036239] seq_release:3 mol_weight=33479 cds_boundaries:(3L:11,956,422..11,958,635[-]) aa_length:293 transcript_info:[CG5684-RB seq_release:3] gene_info:[gene symbol:CG5684 FBgn0036239 gene_boundaries:( [hmr_yeast5_DM3-1_pombe.fasta]
  • >CG5684-PC translation from_gene[CG5684 CG5684 FBgn0036239] seq_release:3 mol_weight=33479 cds_boundaries:(3L:11,956,422..11,958,635[-]) aa_length:293 transcript_info:[CG5684-RC seq_release:3] gene_info:[gene symbol:CG5684 FBgn0036239 gene_boundaries:( [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q8I0I5) CG5684-PB (RH51274p) [DrosMelano7227.FASTAC.txt]
  • CG5684-PC, isoform C [Drosophila melanogaster]gi|23096143|gb|AAN12248.1| CG5684-PB, isoform B [Drosophila melanogaster]gi|24663080|ref|NP_729776.1| CG5684-PC [Drosophila melanogaster]gi|24663076|ref|NP_729775.1| CG5684-PB [Drosophila melanogaster]gi|2 [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=3L:complement(11991971..11992096,11993373..11993790,11993850..11994187); ID=FBpp0075792; name=Pop2-PC; parent=FBgn0036239,FBtr0076060; dbxref=FlyBase:FBpp0075792,FlyBase_Annotation_IDs:CG5684-PC,GB_protein:AAN12249.1,REFSEQ:NP_729776,GB_ [fly-100309-contam.fasta]
  • type=protein; loc=3L:complement(11991971..11992096,11993373..11993790,11993850..11994187); ID=FBpp0075791; name=Pop2-PB; parent=FBgn0036239,FBtr0076059; dbxref=FlyBase:FBpp0075791,FlyBase_Annotation_IDs:CG5684-PB,GB_protein:AAN12248.1,REFSEQ:NP_729775,GB_ [fly-100309-contam.fasta]
  • Pop2 CG5684-PC, isoform C [Drosophila melanogaster] [nr-271106-contam.fasta]
  • RH51274p [Drosophila melanogaster] [nr-271106-contam.fasta]
  • CG5684-PB, isoform B [Drosophila melanogaster] [nr-271106-contam.fasta]
  • Pop2 CG5684-PB, isoform B [Drosophila melanogaster] [nr-271106-contam.fasta]
  • CG5684-PC, isoform C [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=3L:complement(11991971..11992096,11993373..11993790,11993850..11994187); ID=FBpp0075792; name=Pop2-PC; parent=FBgn0036239,FBtr0076060; dbxref=FlyBase:FBpp0075792,FlyBase_Annotation_IDs:CG5684-PC,GB_protein:AAN12249.1,REFSEQ:NP_729776,GB_protein:AAN12249; MD5=6d055e0bc3a413a999b75fdaab9f095e; length=293; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=3L:complement(11991971..11992096,11993373..11993790,11993850..11994187); ID=FBpp0075791; name=Pop2-PB; parent=FBgn0036239,FBtr0076059; dbxref=FlyBase:FBpp0075791,FlyBase_Annotation_IDs:CG5684-PB,GB_protein:AAN12248.1,REFSEQ:NP_729775,GB_protein:AAN12248; MD5=6d055e0bc3a413a999b75fdaab9f095e; length=293; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=3L:complement(11991971..11992096,11993373..11993790,11993850..11994187); ID=FBpp0075792; name=Pop2-PC; parent=FBgn0036239,FBtr0076060; dbxref=FlyBase:FBpp0075792,FlyBase_Annotation_IDs:CG5684-PC,GB_protein:AAN12249.1,REFSEQ:NP_729776,GB_protein:AAN12249; MD5=6d055e0bc3a413a999b75fdaab9f095e; length=293; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • type=protein; loc=3L:complement(11991971..11992096,11993373..11993790,11993850..11994187); ID=FBpp0075791; name=Pop2-PB; parent=FBgn0036239,FBtr0076059; dbxref=FlyBase:FBpp0075791,FlyBase_Annotation_IDs:CG5684-PB,GB_protein:AAN12248.1,REFSEQ:NP_729775,GB_protein:AAN12248; MD5=6d055e0bc3a413a999b75fdaab9f095e; length=293; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • Pop2, isoform B OS=Drosophila melanogaster GN=Pop2 PE=2 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=3L:complement(11991971..11992096,11993373..11993790,11993850..11994187); ID=FBpp0075792; name=Pop2-PC; parent=FBgn0036239,FBtr0076060; dbxref=FlyBase:FBpp0075792,FlyBase_Annotation_IDs:CG5684-PC,GB_protein:AAN12249.1,REFSEQ:NP_729776,GB_protein:AAN12249; MD5=6d055e0bc3a413a999b75fdaab9f095e; length=293; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=3L:complement(11991971..11992096,11993373..11993790,11993850..11994187); ID=FBpp0075791; name=Pop2-PB; parent=FBgn0036239,FBtr0076059; dbxref=FlyBase:FBpp0075791,FlyBase_Annotation_IDs:CG5684-PB,GB_protein:AAN12248.1,REFSEQ:NP_729775,GB_protein:AAN12248,FlyMine:FBpp0075791,modMine:FBpp0075791; MD5=6d055e0bc3a413a999b75fdaab9f095e; length=293; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=3L:complement(join(12000750..12001087,12000273..12000690,11998871..11998996)); ID=FBpp0075792; name=Pop2-PC; parent=FBgn0036239,FBtr0076060; dbxref=FlyBase:FBpp0075792,FlyBase_Annotation_IDs:CG5684-PC,GB_protein:AAN12249.1,REFSEQ:NP_729776,GB_protein:AAN12249; MD5=6d055e0bc3a413a999b75fdaab9f095e; length=293; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=3L:complement(join(12000750..12001087,12000273..12000690,11998871..11998996)); ID=FBpp0075791; name=Pop2-PB; parent=FBgn0036239,FBtr0076059; dbxref=FlyBase:FBpp0075791,FlyBase_Annotation_IDs:CG5684-PB,GB_protein:AAN12248.1,REFSEQ:NP_729775,GB_protein:AAN12248,FlyMine:FBpp0075791,modMine:FBpp0075791; MD5=6d055e0bc3a413a999b75fdaab9f095e; length=293; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=3L:complement(join(12000750..12001087,12000273..12000690,11998871..11998996)); ID=FBpp0075792; name=Pop2-PC; parent=FBgn0036239,FBtr0076060; dbxref=FlyBase:FBpp0075792,FlyBase_Annotation_IDs:CG5684-PC,GB_protein:AAN12249.1,REFSEQ:NP_729776,GB_protein:AAN12249; MD5=6d055e0bc3a413a999b75fdaab9f095e; length=293; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • type=protein; loc=3L:complement(join(12000750..12001087,12000273..12000690,11998871..11998996)); ID=FBpp0075791; name=Pop2-PB; parent=FBgn0036239,FBtr0076059; dbxref=FlyBase:FBpp0075791,FlyBase_Annotation_IDs:CG5684-PB,GB_protein:AAN12248.1,REFSEQ:NP_729775,GB_protein:AAN12248,FlyMine:FBpp0075791,modMine:FBpp0075791; MD5=6d055e0bc3a413a999b75fdaab9f095e; length=293; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • Isoform of X2JCC3, Pop2, isoform B OS=Drosophila melanogaster GN=Pop2 PE=1 SV=1 [DROME.fasta.20160308]
  • FBpp0075792 type=protein; loc=3L:complement(join(12000750..12001087,12000273..12000690,11998871..11998996)); ID=FBpp0075792; name=Pop2-PC; parent=FBgn0036239,FBtr0076060; dbxref=FlyBase:FBpp0075792,FlyBase_Annotation_IDs:CG5684-PC,GB_protein:AAN12249.1,REFSEQ:NP_729776,GB_protein:AAN12249; MD5=6d055e0bc3a413a999b75fdaab9f095e; length=293; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • FBpp0075791 type=protein; loc=3L:complement(join(12000750..12001087,12000273..12000690,11998871..11998996)); ID=FBpp0075791; name=Pop2-PB; parent=FBgn0036239,FBtr0076059; dbxref=FlyBase:FBpp0075791,FlyBase_Annotation_IDs:CG5684-PB,GB_protein:AAN12248.1,REFSEQ:NP_729775,GB_protein:AAN12248,FlyMine:FBpp0075791,modMine:FBpp0075791; MD5=6d055e0bc3a413a999b75fdaab9f095e; length=293; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=3L:complement(join(12000750..12001087,12000273..12000690,11998871..11998996)); ID=FBpp0075792; name=Pop2-PC; parent=FBgn0036239,FBtr0076060; dbxref=FlyBase:FBpp0075792,FlyBase_Annotation_IDs:CG5684-PC,GB_protein:AAN12249.1,REFSEQ:NP_729776,GB_protein:AAN12249,UniProt/TrEMBL:Q8I0I5; MD5=6d055e0bc3a413a999b75fdaab9f095e; length=293; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
  • type=protein; loc=3L:complement(join(12000750..12001087,12000273..12000690,11998871..11998996)); ID=FBpp0075791; name=Pop2-PB; parent=FBgn0036239,FBtr0076059; dbxref=FlyBase:FBpp0075791,FlyBase_Annotation_IDs:CG5684-PB,GB_protein:AAN12248.1,REFSEQ:NP_729775,GB_protein:AAN12248,UniProt/TrEMBL:Q8I0I5,FlyMine:FBpp0075791,modMine:FBpp0075791; MD5=6d055e0bc3a413a999b75fdaab9f095e; length=293; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 293 amino acids

    Gene Ontology:
    Cellular Component: nucleus [ISS]
    cytoplasm [IDA]
    Biological Process: muscle organ development [IMP]
    neuron development [IMP]
    nuclear-transcribed mRNA poly(A) tail shortening [IMP]
    regulation of transcription from RNA polymerase II promoter [ISS]
    Molecular Function: nucleic acid binding [IEA]
    general RNA polymerase II transcription factor activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSAISGAPH AHIPSNEECG IRDVWKQNLE EEFRTIRKVV QKYHYVAMDT EFPGVVARPV  60
   61 GEFRSTADYH YQLLRCNVDL LRIIQLGLTF MDDDGKTPPG YSTWQFNFKF NLSEDMYAQD 120
  121 SIDLLQNSGI QFKKHEEDGI DPIDFAELLM SSGIVLVENI KWLCFHSGYD FGYLLKLLTD 180
  181 QNLPPDESEF FDLLHIYFPN IFDIKYLMKS CKNLKGGLQE VADQLELRRV GPQHQAGSDA 240
  241 LLTGMAFFKM REMFFEDNID HAKYSGHLYG LGTSFIVNGT NFHDSNGETN SAS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data



    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle