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Protein Overview: slbo-PA, FBpp0308452

General Information:
Name(s) found: FBpp0308452 [FlyBase]
slbo-PA / FBpp0072179 [FlyBase]
Description(s) found:
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  • gi|7291773|gb|AAF47194.1| slow border cells [Drosophila melanogaster] [NCBI NR]
  • gi|68067724|sp|Q02637.3|CEBP_DROME RecName: Full=CCAAT/enhancer-binding protein; Short=C/EBP; AltName: Full=Slow border cell protein [NCBI NR]
  • gi|33589388|gb|AAQ22461.1| RE37385p [Drosophila melanogaster] [NCBI NR]
  • gi|17647933|ref|NP_523843.1| slow border cells [Drosophila melanogaster] [NCBI NR]
  • CCAAT/enhancer-binding protein OS=Drosophila melanogaster GN=slbo PE=1 SV=3 [Swiss-Prot]
  • type=protein; loc=2R:complement(20219944..20221293); ID=FBpp0308452; name=slbo-PB; parent=FBgn0005638,FBtr0339359; dbxref=FlyBase:FBpp0308452,FlyBase_Annotation_IDs:CG4354-PB; MD5=2753def023aec3e4f0090f069fe5fe40; length=449; release=r5.56; species=Dmel; [FlyBase]
  • The gene slow border cells is referred to in FlyBase by the symbol Dmel\slbo (CG4354, FBgn0005638). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:20219045..20221829. It has the cytological map location 60C6. Based on sequence similarity, it is predicted to have molecular function</span>: protein heterodimerization activity. There is experimental evidence that it is involved in the biological process</span>: border follicle cell migration. 65 alleles are reported. The phenotypes of these alleles are annotated with: polar follicle cell; border follicle cell; wing. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • >CG4354-PA translation from_gene[CG4354 slbo FBgn0005638] seq_release:3 mol_weight=49421 cds_boundaries:(2R:19,375,992..19,377,338[-]) aa_length:449 transcript_info:[CG4354-RA seq_release:3] gene_info:[gene symbol:slbo FBgn0005638 gene_boundaries:(2R:1 [hmr_yeast5_DM3-1_pombe.fasta]
  • (AE003463) slbo gene product [Drosophila melanogaster] [yeastflysequest.fasta]
  • CG4354-PA [Drosophila melanogaster]gi|33589388|gb|AAQ22461.1| RE37385p [Drosophila melanogaster]gi|17647933|ref|NP_523843.1| CG4354-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=2R:complement(20219944..20221293); ID=FBpp0072179; name=slbo-PA; parent=FBgn0005638,FBtr0072272; dbxref=FlyBase:FBpp0072179,FlyBase_Annotation_IDs:CG4354-PA,GB_protein:AAF47194.1,REFSEQ:NP_523843,GB_protein:AAF47194; MD5=2753def023aec3e4 [fly-100309-contam.fasta]
  • CCAAT/enhancer-binding protein (C/EBP) (Slow border cell protein) [nr-271106-contam.fasta]
  • CG4354-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • slow border cells CG4354-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • RE37385p [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=2R:complement(20219944..20221293); ID=FBpp0072179; name=slbo-PA; parent=FBgn0005638,FBtr0072272; dbxref=FlyBase:FBpp0072179,FlyBase_Annotation_IDs:CG4354-PA,GB_protein:AAF47194.1,REFSEQ:NP_523843,GB_protein:AAF47194; MD5=2753def023aec3e4f0090f069fe5fe40; length=449; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2R:complement(20219944..20221293); ID=FBpp0072179; name=slbo-PA; parent=FBgn0005638,FBtr0072272; dbxref=FlyBase:FBpp0072179,FlyBase_Annotation_IDs:CG4354-PA,GB_protein:AAF47194.1,REFSEQ:NP_523843,GB_protein:AAF47194; MD5=2753def023aec3e4f0090f069fe5fe40; length=449; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • type=protein; loc=2R:complement(20219944..20221293); ID=FBpp0072179; name=slbo-PA; parent=FBgn0005638,FBtr0072272; dbxref=FlyBase:FBpp0072179,FlyBase_Annotation_IDs:CG4354-PA,GB_protein:AAF47194.1,REFSEQ:NP_523843,GB_protein:AAF47194,FlyMine:FBpp0072179,modMine:FBpp0072179; MD5=2753def023aec3e4f0090f069fe5fe40; length=449; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=2R:complement(24332421..24333770); ID=FBpp0072179; name=slbo-PA; parent=FBgn0005638,FBtr0072272; dbxref=FlyBase:FBpp0072179,FlyBase_Annotation_IDs:CG4354-PA,GB_protein:AAF47194.1,REFSEQ:NP_523843,GB_protein:AAF47194,FlyMine:FBpp0072179,modMine:FBpp0072179; MD5=2753def023aec3e4f0090f069fe5fe40; length=449; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2R:complement(24332421..24333770); ID=FBpp0308452; name=slbo-PB; parent=FBgn0005638,FBtr0339359; dbxref=GB_protein:AHN56631,REFSEQ:NP_001286836,FlyBase:FBpp0308452,FlyBase_Annotation_IDs:CG4354-PB; MD5=2753def023aec3e4f0090f069fe5fe40; length=449; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2R:complement(24332421..24333770); ID=FBpp0072179; name=slbo-PA; parent=FBgn0005638,FBtr0072272; dbxref=FlyBase:FBpp0072179,FlyBase_Annotation_IDs:CG4354-PA,GB_protein:AAF47194.1,REFSEQ:NP_523843,GB_protein:AAF47194,FlyMine:FBpp0072179,modMine:FBpp0072179; MD5=2753def023aec3e4f0090f069fe5fe40; length=449; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • type=protein; loc=2R:complement(24332421..24333770); ID=FBpp0308452; name=slbo-PB; parent=FBgn0005638,FBtr0339359; dbxref=GB_protein:AHN56631,REFSEQ:NP_001286836,FlyBase:FBpp0308452,FlyBase_Annotation_IDs:CG4354-PB; MD5=2753def023aec3e4f0090f069fe5fe40; length=449; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • Isoform of Q02637, Slow border cells, isoform B OS=Drosophila melanogaster GN=slbo PE=4 SV=1 [DROME.fasta.20160308]
  • FBpp0072179 type=protein; loc=2R:complement(24332421..24333770); ID=FBpp0072179; name=slbo-PA; parent=FBgn0005638,FBtr0072272; dbxref=FlyBase:FBpp0072179,FlyBase_Annotation_IDs:CG4354-PA,GB_protein:AAF47194.1,REFSEQ:NP_523843,GB_protein:AAF47194,FlyMine:FBpp0072179,modMine:FBpp0072179; MD5=2753def023aec3e4f0090f069fe5fe40; length=449; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • FBpp0308452 type=protein; loc=2R:complement(24332421..24333770); ID=FBpp0308452; name=slbo-PB; parent=FBgn0005638,FBtr0339359; dbxref=GB_protein:AHN56631,REFSEQ:NP_001286836,FlyBase:FBpp0308452,FlyBase_Annotation_IDs:CG4354-PB; MD5=2753def023aec3e4f0090f069fe5fe40; length=449; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=2R:complement(24332421..24333770); ID=FBpp0072179; name=slbo-PA; parent=FBgn0005638,FBtr0072272; dbxref=FlyBase:FBpp0072179,FlyBase_Annotation_IDs:CG4354-PA,GB_protein:AAF47194.1,REFSEQ:NP_523843,GB_protein:AAF47194,UniProt/Swiss-Prot:Q02637,FlyMine:FBpp0072179,modMine:FBpp0072179; MD5=2753def023aec3e4f0090f069fe5fe40; length=449; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
  • type=protein; loc=2R:complement(24332421..24333770); ID=FBpp0308452; name=slbo-PB; parent=FBgn0005638,FBtr0339359; dbxref=GB_protein:AHN56631,REFSEQ:NP_001286836,FlyBase:FBpp0308452,FlyBase_Annotation_IDs:CG4354-PB,UniProt/Swiss-Prot:Q02637; MD5=2753def023aec3e4f0090f069fe5fe40; length=449; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 449 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA][NAS]
    Biological Process: regulation of transcription, DNA-dependent [IEA][NAS]
    border follicle cell migration [IMP][NAS][TAS]
    cell fate specification [TAS]
    Molecular Function: DNA binding [NAS]
    transcription factor activity [IEA]
    protein heterodimerization activity [ISS]
    transcription regulator activity [NAS]
    protein dimerization activity [IEA]
    sequence-specific DNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNMESPQMY ADAVQTLAQL DLKKEPPLQQ ATIGQITLTA MSTAQQQQQQ QQQQQQQQQQ  60
   61 QQQQQQQQPQ QQTTDANNNT SQDAALLVKQ HAMHQMQQVA ALGSNNNLLQ KQMLQQYSTQ 120
  121 TDLDELTTQE ITLDLQHLID DQFRDTETLG IFSDMVTSPG GLSATLPPSG MVSAAAKVLQ 180
  181 QQTLRNQHGY GGRGGGGGAG GALAYMPQPV HATYNNSSDE NSSVGSDSST IKEEPIDPEY 240
  241 RRHLQEAASQ QAAFMGNGAG LYNGYGSGAN GLTGGGNPLN GGNTTPSSNG SNGSTGSSNG 300
  301 SQFTNLTTAN VLAHHNLPHL AAAAGAHNLL KQHSKLHAQQ QHQQHQQQQQ HRKHSNKHVD 360
  361 KGTDEYRRRR ERNNIAVRKS REKAKVRSRE VEERVKSLLK EKDALIRQLG EMTNELQLHK 420
  421 QIYMQLMNHA NPEVSRVCRS FLNTNEHSL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..90] deduced N/A No confident structure predictions are available.
    2 View Details [91..157] MSA 1.11399 View MSA. No confident structure predictions are available.
    3 View Details [158..354] MSA 2.255997 View MSA. No confident structure predictions are available.
    4 View Details [355..449] PSI-BLAST 17.522879 CRYSTAL STRUCTURE OF C/EBPBETA BZIP HOMODIMER BOUND TO A DNA FRAGMENT FROM THE TOM-1A PROMOTER


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.93

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle