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Protein Overview: Ssrp-PA

General Information:
Name(s) found: Ssrp-PA / FBpp0072151 [FlyBase]
Description(s) found:
Found 26 descriptions.
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  • The gene Structure specific recognition protein is referred to in FlyBase by the symbol Dmel\Ssrp (CG4817, FBgn0010278). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:19693884..19696518. It has the cytological map location 60A2. There is experimental evidence that it has the molecular function</span>: nucleosomal DNA binding; protein binding; protein self-association. There is experimental evidence that it is involved in the biological process</span>: regulation of DNA binding; regulation of chromatin assembly or disassembly. 4 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 723 amino acids

    Gene Ontology:
    Cellular Component: nucleus [ISS][NAS]
    FACT complex [IDA][TAS]
    nucleolus [NAS]
    Biological Process: regulation of DNA binding [IMP]
    regulation of chromatin assembly or disassembly [IMP]
    Molecular Function: protein binding [IPI]
    single-stranded RNA binding [NAS]
    nucleosomal DNA binding [IDA]
    DNA secondary structure binding [ISS]
    protein self-association [IDA]
    single-stranded DNA binding [ISS][NAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDSLEYNDI NAEVRGVLCS GRLKMTEQNI IFKNTKTGKV EQISAEDIDL INSQKFVGTW  60
   61 GLRVFTKGGV LHRFTGFRDS EHEKLGKFIK AAYSQEMVEK EMCVKGWNWG TARFMGSVLS 120
  121 FDKESKTIFE VPLSHVSQCV TGKNEVTLEF HQNDDAPVGL LEMRFHIPAV ESAEEDPVDK 180
  181 FHQNVMSKAS VISASGESIA IFREIQILTP RGRYDIKIFS TFFQLHGKTF DYKIPMDSVL 240
  241 RLFMLPHKDS RQMFFVLSLD PPIKQGQTRY HYLVLLFAPD EETTIELPFS EAELRDKYEG 300
  301 KLEKEISGPV YEVMGKVMKV LIGRKITGPG NFIGHSGTAA VGCSFKAAAG YLYPLERGFI 360
  361 YIHKPPLHIR FEEISSVNFA RSGGSTRSFD FEVTLKNGTV HIFSSIEKEE YAKLFDYITQ 420
  421 KKLHVSNMGK DKSGYKDVDF GDSDNENEPD AYLARLKAEA REKEEDDDDG DSDEESTDED 480
  481 FKPNENESDV AEEYDSNVES DSDDDSDASG GGGDSDGAKK KKEKKSEKKE KKEKKHKEKE 540
  541 RTKKPSKKKK DSGKPKRATT AFMLWLNDTR ESIKRENPGI KVTEIAKKGG EMWKELKDKS 600
  601 KWEDAAAKDK QRYHDEMRNY KPEAGGDSDN EKGGKSSKKR KTEPSPSKKA NTSGSGFKSK 660
  661 EYISDDDSTS SDDEKDNEPA KKKSKPPSDG DAKKKKAKSE SEPEESEEDS NASDEDEEDE 720
  721 ASD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..123] MSA 2.068972 View MSA. No confident structure predictions are available.
    2 View Details [124..447] PSI-BLAST 73.69897 No description for 2gclA was found.
    3 View Details [448..550] deduced N/A No confident structure predictions are available.
    4 View Details [551..639] PSI-BLAST 10.69897 Solution Structure of the HMG-box domain in the SSRP1 subunit of FACT
    5 View Details [640..723] FFAS03 1.16 No description for 2j63A was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle