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Protein Overview: CG3875-PA, FBpp0...

General Information:
Name(s) found: FBpp0311607 [FlyBase]
CG3875-PA / FBpp0071772 [FlyBase]
Description(s) found:
Found 24 descriptions.
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  • type=protein; loc=2R:join(18538142..18538316,18538375..18538496,18538558..18538922,18539047..18539136,18539264..18539352,18539500..18539681); ID=FBpp0311607; name=nsr-PB; parent=FBgn0034740,FBtr0345496; dbxref=FlyBase:FBpp0311607,FlyBase_Annotation_IDs:CG3875-PB; MD5=fe70997220604f9af6cd86eef4c80f61; length=340; release=r5.56; species=Dmel; [FlyBase]
  • This gene is referred to in FlyBase by the symbol Dmel\CG3875 (CG3875, FBgn0034740). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:18538079..18539834. It has the cytological map location 58F4. An electronic pipeline based on InterPro domains suggests that it has the molecular function</span>: RNA binding. Based on sequence similarity, it is predicted to be involved in the biological process</span>: ubiquinone biosynthetic process. 2 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 340 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: ubiquinone biosynthetic process [ISS]
    Molecular Function: RNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METQSEFTEE QNQDQPTQDQ PTYQPRLNEV AQKFLADLDE ERKRLSAEFP LCALLIDESV  60
   61 DRVFSTGRIP GKEFYADVYH QRPMKITQKV FVPVNKFPKF NFARKILGPK GNSVRRLKEE 120
  121 TNCKIVIKGR SSMRDRNKEE ELRSSGDPRY AHLHKDLFLE VSAVAPPAEC YARIAYALAE 180
  181 IRKYLIPDDN DDVWHEQQRE LMEMNPESAK KSNGLNMAPY RSIFDKTIGG NRNGAPKYNN 240
  241 QIRRVTENPR EVADMEEVEY DYDEHRMPPS RPSLGFEYSK PPPSMTATNA TPFKRAYPYP 300
  301 TDMNRTREPP IKSYKPNPYT ILNKYINNRA PSDFVAQRYN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..65] MSA 1.114996 View MSA. No confident structure predictions are available.
    2 View Details [66..221] PSI-BLAST 48.39794 Solution structure of the KH-QUA2 region of the Xenopus STAR-GSG Quaking protein.
    3 View Details [222..340] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  4.04366657586229 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.9975833546175 bayes_pls_golite062009
  • protein binding
    		•  2.23982167381721 bayes_pls_golite062009
  • RNA binding
    		•  1.92480731732573 bayes_pls_golite062009
  • mRNA binding
    		•  0.492861030614662 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.441650663459137 bayes_pls_golite062009
  • DNA binding
    		•  0.355450873947182 bayes_pls_golite062009
  • catalytic activity
    		•  0.113112541746059 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle