| Protein: | CG3875-PA, FBpp0... |
| Organism: | Drosophila melanogaster |
| Length: | 340 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG3875-PA, FBpp0....
| Description | E-value | Query Range |
Subject Range |
|
|
306.0 | [0..1] | [325..4] |
|
Region A: Residues: [1-65] |
1 11 21 31 41 51
| | | | | |
1 METQSEFTEE QNQDQPTQDQ PTYQPRLNEV AQKFLADLDE ERKRLSAEFP LCALLIDESV 60
61 DRVFS
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [66-221] |
1 11 21 31 41 51
| | | | | |
1 TGRIPGKEFY ADVYHQRPMK ITQKVFVPVN KFPKFNFARK ILGPKGNSVR RLKEETNCKI 60
61 VIKGRSSMRD RNKEEELRSS GDPRYAHLHK DLFLEVSAVA PPAECYARIA YALAEIRKYL 120
121 IPDDNDDVWH EQQRELMEMN PESAKKSNGL NMAPYR
|
| Detection Method: | |
| Confidence: | 48.39794 |
| Match: | 2bl5A |
| Description: | Solution structure of the KH-QUA2 region of the Xenopus STAR-GSG Quaking protein. |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 4.04366657586229 | bayes_pls_golite062009 |
| nucleic acid binding | 2.9975833546175 | bayes_pls_golite062009 |
| protein binding | 2.23982167381721 | bayes_pls_golite062009 |
| RNA binding | 1.92480731732573 | bayes_pls_golite062009 |
| mRNA binding | 0.492861030614662 | bayes_pls_golite062009 |
| transcription regulator activity | 0.441650663459137 | bayes_pls_golite062009 |
| DNA binding | 0.355450873947182 | bayes_pls_golite062009 |
| catalytic activity | 0.113112541746059 | bayes_pls_golite062009 |
|
Region A: Residues: [222-340] |
1 11 21 31 41 51
| | | | | |
1 SIFDKTIGGN RNGAPKYNNQ IRRVTENPRE VADMEEVEYD YDEHRMPPSR PSLGFEYSKP 60
61 PPSMTATNAT PFKRAYPYPT DMNRTREPPI KSYKPNPYTI LNKYINNRAP SDFVAQRYN
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
