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Protein Overview: gi|16198253, gi|...

General Information:
Name(s) found: gi|24658069 [NCBI NR]
gi|21626562 [NCBI NR]
gi|16198253 [NCBI NR]
Description(s) found:
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  • gi|24658069|ref|NP_477306.2| quaking related 58E-3 CG3584-PA [Drosophila melanogaster] [NCBI NR]
  • gi|21626562|gb|AAF46842.2| CG3584-PA [Drosophila melanogaster] [NCBI NR]
  • gi|16198253|gb|AAL13953.1| LD46502p [Drosophila melanogaster] [NCBI NR]
  • >CG3584-PA translation from_gene[CG3584 qkr58E-3 FBgn0022984] seq_release:3 mol_weight=37057 cds_boundaries:(2R:17,453,440..17,455,008[-]) aa_length:320 transcript_info:[CG3584-RA seq_release:3] gene_info:[gene symbol:qkr58E-3 FBgn0022984 gene_boundari [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q95TJ8) LD46502p (CG3584-PA) [DrosMelano7227.FASTAC.txt]
  • LD46502p [Drosophila melanogaster]gi|21626562|gb|AAF46842.2| CG3584-PA [Drosophila melanogaster]gi|24658069|ref|NP_477306.2| CG3584-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • LD46502p [Drosophila melanogaster] [nr-271106-contam.fasta]
  • quaking related 58E-3 CG3584-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • CG3584-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • LD46502p OS=Drosophila melanogaster GN=qkr58E-3 PE=1 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
    • Organism: Drosophila melanogaster
    Length: 320 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: regulation of alternative nuclear mRNA splicing, via spliceosome [IMP]
    apoptosis [IGI][IMP][IPI]
    Molecular Function: RNA binding [IDA]
    mRNA binding [NAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKMETPSEF TEKQPPTHDH QPRLNEVAQK FLADLDEERQ RLSADFPLCA LLIDEAVDRV  60
   61 YCTGRIPGKE FYADVYKQKP MKITQKVFVP VKQYPKFNFT GKILGPKGNS LRRLQEETQC 120
  121 KIAIKGRSSI RDRNKEEQLR STGDPRYAHL QKDLFLEVST VATPAECYAR IAYALAEIRK 180
  181 YLIPDKNDEV SHEQLRELME MDPESAKNIH GPNLEAYRSV FDKKFGGNSN GAPKYINLIK 240
  241 RAAENPPEVD DVEEVAYEYE HRMPPKRPPT GYEYSKPRPS IIPTNAAAYK RPYPTDMKRM 300
  301 REPPIKSYKP NPYTILKKYK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..71] deduced N/A No confident structure predictions are available.
    2 View Details [72..212] PSI-BLAST 45.522879 Solution structure of the KH-QUA2 region of the Xenopus STAR-GSG Quaking protein.
    3 View Details [213..320] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  4.04366657586229 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.9975833546175 bayes_pls_golite062009
  • protein binding
    		•  2.23982167381721 bayes_pls_golite062009
  • RNA binding
    		•  1.92480731732573 bayes_pls_golite062009
  • mRNA binding
    		•  0.492861030614662 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.441650663459137 bayes_pls_golite062009
  • DNA binding
    		•  0.355450873947182 bayes_pls_golite062009
  • catalytic activity
    		•  0.113112541746059 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle