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Protein Overview: gi|24655858, gi|...

General Information:
Name(s) found: gi|24655858 [NCBI NR]
gi|21626940 [NCBI NR]
Description(s) found:
Found 9 descriptions.
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  • gi|24655858|ref|NP_725913.1| smooth, isoform C [Drosophila melanogaster] [NCBI NR]
  • gi|21626940|gb|AAM68420.1| smooth, isoform C [Drosophila melanogaster] [NCBI NR]
    • Organism: Drosophila melanogaster
    Length: 414 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    ribonucleoprotein complex [NAS]
    Biological Process: axon guidance [IMP]
    mRNA processing [IEA]
    adult feeding behavior [IMP]
    Molecular Function: nucleotide binding [IEA]
    RNA binding [IEA]
    mRNA binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPYNGASNGS GASGAGGGGA TIVVTEGPQN KKIRTGVQQP GENDVHMHAR STPQQNQQQA  60
   61 LMNKSNDDLR RKRPETTRPN HILLFTIINP FYPITVPEKL NVYKNEPDTS WDYTLSTEPP 120
  121 LLGPGAAFPP FGAPEYHTTT PENWKGAAIH PTGLMKEPAG VVPGRNAPVA FTPQGQAQGA 180
  181 VMMVYGLDHD TSNTDKLFNL VCLYGNVARI KFLKTKEGTA MVQMGDAVAV ERCVQHLNNI 240
  241 PVGTGGKIQI AFSKQNFLSE VINPFLLPDH SPSFKEYTGS KNNRFLSPAQ ASKNRIQPPS 300
  301 KILHFFNTPP GLTEDQLIGI FNIKDVPATS VRLFPLKTER SSSGLIEFSN ISQAVLAIMK 360
  361 CNHLPIEGKG TKFPFIMKLC FSSSKSMNGA WNNAASEGMI EKENEVDTKV DIYN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..75] PSI-BLAST 13.30103 Solution structure of RRM domain in protein BAB28521
    2 View Details [76..174] deduced N/A No confident structure predictions are available.
    3 View Details [175..414] PSI-BLAST 33.0 Solution structure of Polypyrimidine Tract Binding protein RBD34 complexed with CUCUCU RNA

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • RNA binding
    		•  6.73097473547076 bayes_pls_golite062009
  • mRNA binding
    		•  5.29759606920196 bayes_pls_golite062009
    		• 4.67888641618755 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.81920018903278 bayes_pls_golite062009
  • binding
    		•  3.49612884560266 bayes_pls_golite062009
  • poly-pyrimidine tract binding
    		•  3.11990160533699 bayes_pls_golite062009
  • single-stranded RNA binding
    		•  2.93798024346416 bayes_pls_golite062009
  • snRNA binding
    		•  1.76821382294389 bayes_pls_golite062009
  • structural molecule activity
    		•  1.29928829870122 bayes_pls_golite062009
  • protein binding
    		•  1.14508556628804 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.07788694919471 bayes_pls_golite062009
  • DNA binding
    		•  0.978604858165557 bayes_pls_golite062009
  • U1 snRNA binding
    		•  0.612226940931031 bayes_pls_golite062009
  • mRNA 3'-UTR binding
    		•  0.591700155096213 bayes_pls_golite062009
  • transcription factor activity
    		•  0.234742017105535 bayes_pls_golite062009
  • transporter activity
    		•  0.00947930769815086 bayes_pls_golite062009
    2 No functions predicted.
    3
    Term Confidence Notes
  • RNA binding
    		•  6.73097473547076 bayes_pls_golite062009
  • mRNA binding
    		•  5.29759606920196 bayes_pls_golite062009
    		• 4.67888641618755 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.81920018903278 bayes_pls_golite062009
  • binding
    		•  3.49612884560266 bayes_pls_golite062009
  • poly-pyrimidine tract binding
    		•  3.11990160533699 bayes_pls_golite062009
  • single-stranded RNA binding
    		•  2.93798024346416 bayes_pls_golite062009
  • snRNA binding
    		•  1.76821382294389 bayes_pls_golite062009
  • structural molecule activity
    		•  1.29928829870122 bayes_pls_golite062009
  • protein binding
    		•  1.14508556628804 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.07788694919471 bayes_pls_golite062009
  • DNA binding
    		•  0.978604858165557 bayes_pls_golite062009
  • U1 snRNA binding
    		•  0.612226940931031 bayes_pls_golite062009
  • mRNA 3'-UTR binding
    		•  0.591700155096213 bayes_pls_golite062009
  • transcription factor activity
    		•  0.234742017105535 bayes_pls_golite062009
  • transporter activity
    		•  0.00947930769815086 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.92

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle