| Protein: | gi|24655858, gi|... |
| Organism: | Drosophila melanogaster |
| Length: | 414 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24655858, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
286.0 | [0..18] | [401..41] |
|
Region A: Residues: [1-75] |
1 11 21 31 41 51
| | | | | |
1 MPYNGASNGS GASGAGGGGA TIVVTEGPQN KKIRTGVQQP GENDVHMHAR STPQQNQQQA 60
61 LMNKSNDDLR RKRPE
|
| Detection Method: |  |
| Confidence: | 13.30103 |
| Match: | 1wexA |
| Description: | Solution structure of RRM domain in protein BAB28521 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 6.73097473547076 | bayes_pls_golite062009 |
| mRNA binding | 5.29759606920196 | bayes_pls_golite062009 |
| 4.67888641618755 | bayes_pls_golite062009 | |
| nucleic acid binding | 3.81920018903278 | bayes_pls_golite062009 |
| binding | 3.49612884560266 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 3.11990160533699 | bayes_pls_golite062009 |
| single-stranded RNA binding | 2.93798024346416 | bayes_pls_golite062009 |
| snRNA binding | 1.76821382294389 | bayes_pls_golite062009 |
| structural molecule activity | 1.29928829870122 | bayes_pls_golite062009 |
| protein binding | 1.14508556628804 | bayes_pls_golite062009 |
| transcription regulator activity | 1.07788694919471 | bayes_pls_golite062009 |
| DNA binding | 0.978604858165557 | bayes_pls_golite062009 |
| U1 snRNA binding | 0.612226940931031 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.591700155096213 | bayes_pls_golite062009 |
| transcription factor activity | 0.234742017105535 | bayes_pls_golite062009 |
| transporter activity | 0.00947930769815086 | bayes_pls_golite062009 |
|
Region A: Residues: [76-174] |
1 11 21 31 41 51
| | | | | |
1 TTRPNHILLF TIINPFYPIT VPEKLNVYKN EPDTSWDYTL STEPPLLGPG AAFPPFGAPE 60
61 YHTTTPENWK GAAIHPTGLM KEPAGVVPGR NAPVAFTPQ
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [175-414] |
1 11 21 31 41 51
| | | | | |
1 GQAQGAVMMV YGLDHDTSNT DKLFNLVCLY GNVARIKFLK TKEGTAMVQM GDAVAVERCV 60
61 QHLNNIPVGT GGKIQIAFSK QNFLSEVINP FLLPDHSPSF KEYTGSKNNR FLSPAQASKN 120
121 RIQPPSKILH FFNTPPGLTE DQLIGIFNIK DVPATSVRLF PLKTERSSSG LIEFSNISQA 180
181 VLAIMKCNHL PIEGKGTKFP FIMKLCFSSS KSMNGAWNNA ASEGMIEKEN EVDTKVDIYN 240
241
|
| Detection Method: | |
| Confidence: | 33.0 |
| Match: | 2adcA |
| Description: | Solution structure of Polypyrimidine Tract Binding protein RBD34 complexed with CUCUCU RNA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 6.73097473547076 | bayes_pls_golite062009 |
| mRNA binding | 5.29759606920196 | bayes_pls_golite062009 |
| 4.67888641618755 | bayes_pls_golite062009 | |
| nucleic acid binding | 3.81920018903278 | bayes_pls_golite062009 |
| binding | 3.49612884560266 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 3.11990160533699 | bayes_pls_golite062009 |
| single-stranded RNA binding | 2.93798024346416 | bayes_pls_golite062009 |
| snRNA binding | 1.76821382294389 | bayes_pls_golite062009 |
| structural molecule activity | 1.29928829870122 | bayes_pls_golite062009 |
| protein binding | 1.14508556628804 | bayes_pls_golite062009 |
| transcription regulator activity | 1.07788694919471 | bayes_pls_golite062009 |
| DNA binding | 0.978604858165557 | bayes_pls_golite062009 |
| U1 snRNA binding | 0.612226940931031 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.591700155096213 | bayes_pls_golite062009 |
| transcription factor activity | 0.234742017105535 | bayes_pls_golite062009 |
| transporter activity | 0.00947930769815086 | bayes_pls_golite062009 |
