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Protein Overview: Lhr-PA

General Information:
Name(s) found: Lhr-PA / FBpp0086073 [FlyBase]
Description(s) found:
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  • gi|28573517|ref|NP_611210.3| lethal hybrid rescue [Drosophila melanogaster] [NCBI NR]
  • gi|28380756|gb|AAF57867.2| lethal hybrid rescue [Drosophila melanogaster] [NCBI NR]
  • gi|16768882|gb|AAL28660.1| LD09786p [Drosophila melanogaster] [NCBI NR]
  • The gene Lethal hybrid rescue is referred to in FlyBase by the symbol Dmel\Lhr (CG18468, FBgn0034217). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:13318556..13319728. It has the cytological map location 54B7. An electronic pipeline based on InterPro domains suggests that it has the molecular function</span>: DNA binding. The biological processes in which it is involved are not known. 3 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • >CG18468-PA translation from_gene[CG18468 CG18468 FBgn0034217] seq_release:3 mol_weight=38642 cds_boundaries:(2R:12,494,885..12,495,886[+]) aa_length:334 transcript_info:[CG18468-RA seq_release:3] gene_info:[gene symbol:CG18468 FBgn0034217 gene_boundar [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q95RV3) LD09786p (CG18468-PA) [DrosMelano7227.FASTAC.txt]
  • CG18468-PA [Drosophila melanogaster]gi|16768882|gb|AAL28660.1| LD09786p [Drosophila melanogaster]gi|28573517|ref|NP_611210.3| CG18468-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=2R:13318665..13319669; ID=FBpp0086073; name=Lhr-PA; parent=FBgn0034217,FBtr0086917; dbxref=FlyBase:FBpp0086073,FlyBase_Annotation_IDs:CG18468-PA,GB_protein:AAF57867.2,REFSEQ:NP_611210,GB_protein:AAF57867; MD5=82e84e6310cf5dd4f95ede6536ba [fly-100309-contam.fasta]
  • CG18468-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • LD09786p [Drosophila melanogaster] [nr-271106-contam.fasta]
  • Lethal hybrid rescue CG18468-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=2R:13318665..13319669; ID=FBpp0086073; name=Lhr-PA; parent=FBgn0034217,FBtr0086917; dbxref=FlyBase:FBpp0086073,FlyBase_Annotation_IDs:CG18468-PA,GB_protein:AAF57867.2,REFSEQ:NP_611210,GB_protein:AAF57867; MD5=82e84e6310cf5dd4f95ede6536ba4a95; length=334; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2R:13318665..13319669; ID=FBpp0086073; name=Lhr-PA; parent=FBgn0034217,FBtr0086917; dbxref=FlyBase:FBpp0086073,FlyBase_Annotation_IDs:CG18468-PA,GB_protein:AAF57867.2,REFSEQ:NP_611210,GB_protein:AAF57867; MD5=82e84e6310cf5dd4f95ede6536ba4a95; length=334; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • LD09786p OS=Drosophila melanogaster GN=Lhr PE=1 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=2R:13318665..13319669; ID=FBpp0086073; name=Lhr-PA; parent=FBgn0034217,FBtr0086917; dbxref=FlyBase:FBpp0086073,FlyBase_Annotation_IDs:CG18468-PA,GB_protein:AAF57867.2,REFSEQ:NP_611210,GB_protein:AAF57867,FlyMine:FBpp0086073,modMine:FBpp0086073; MD5=82e84e6310cf5dd4f95ede6536ba4a95; length=334; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • LD09786p OS=Drosophila melanogaster GN=Lhr PE=2 SV=1 [UniProt_D_Melanogaster_07132012_07-13-2012_reversed.fasta]
  • type=protein; loc=2R:17431160..17432164; ID=FBpp0086073; name=Lhr-PA; parent=FBgn0034217,FBtr0086917; dbxref=FlyBase:FBpp0086073,FlyBase_Annotation_IDs:CG18468-PA,GB_protein:AAF57867.2,REFSEQ:NP_611210,GB_protein:AAF57867,FlyMine:FBpp0086073,modMine:FBpp0086073; MD5=82e84e6310cf5dd4f95ede6536ba4a95; length=334; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2R:17431160..17432164; ID=FBpp0086073; name=Lhr-PA; parent=FBgn0034217,FBtr0086917; dbxref=FlyBase:FBpp0086073,FlyBase_Annotation_IDs:CG18468-PA,GB_protein:AAF57867.2,REFSEQ:NP_611210,GB_protein:AAF57867,FlyMine:FBpp0086073,modMine:FBpp0086073; MD5=82e84e6310cf5dd4f95ede6536ba4a95; length=334; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • FBpp0086073 type=protein; loc=2R:17431160..17432164; ID=FBpp0086073; name=Lhr-PA; parent=FBgn0034217,FBtr0086917; dbxref=FlyBase:FBpp0086073,FlyBase_Annotation_IDs:CG18468-PA,GB_protein:AAF57867.2,REFSEQ:NP_611210,GB_protein:AAF57867,FlyMine:FBpp0086073,modMine:FBpp0086073; MD5=82e84e6310cf5dd4f95ede6536ba4a95; length=334; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=2R:17431160..17432164; ID=FBpp0086073; name=Lhr-PA; parent=FBgn0034217,FBtr0086917; dbxref=FlyBase:FBpp0086073,FlyBase_Annotation_IDs:CG18468-PA,GB_protein:AAF57867.2,REFSEQ:NP_611210,GB_protein:AAF57867,UniProt/TrEMBL:Q95RV3,FlyMine:FBpp0086073,modMine:FBpp0086073; MD5=82e84e6310cf5dd4f95ede6536ba4a95; length=334; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 334 amino acids

    Gene Ontology:
    Cellular Component: heterochromatin [IDA]
    chromocenter [IDA]
    Biological Process: NONE FOUND
    Molecular Function: DNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCCRTLEKHS AKNIKMSTDS AEETVIHSTV PHLEINISNT NISGQIVLND LLLMEMLARY  60
   61 PFLIIPQVEP KMDVDYDSWG WDQLAKSFNQ SYEHVELSTP FSVSELKLRW VKLRPLVRAL 120
  121 AGSKGQIPEP LWRVMHDVHI RMQAPNPADV PKTKCQEFLL SQLPFVKSMA QAERRHLEVE 180
  181 VLALILEQER QEKATRKLGP KDLETVQSEY DEFLKAIRVK ELPADNLLSP AMDRFGISPH 240
  241 KIRPNVASAN KRIRYNNACK GSNDVKIKIE TAIEPKIKDT TKCDERPIET PRFVPLKSAK 300
  301 YYIKRCRIRL KRVEIDDYLP LARIRRSRRP TLRT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..241] deduced N/A No confident structure predictions are available.
    2 View Details [242..334] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle