YRC Public Data Repository - Protein Structure Prediction

Protein:	Lhr-PA
Organism:	Drosophila melanogaster
Length:	334 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Lhr-PA.

Description	E-value	Query Range	Subject Range
gi\|54635737, gi\|... - gi\|54635737\|gb\|EAL25140.1\| GA14945-PA [Drosophila pseudoobscura], gi\|125807916\|ref\|XP_001360565.1\| G...	491.0	[0..28]	[333..1]

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Predicted Domain #1

Region A:
Residues: [1-241]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCCRTLEKHS AKNIKMSTDS AEETVIHSTV PHLEINISNT NISGQIVLND LLLMEMLARY  60
   61 PFLIIPQVEP KMDVDYDSWG WDQLAKSFNQ SYEHVELSTP FSVSELKLRW VKLRPLVRAL 120
  121 AGSKGQIPEP LWRVMHDVHI RMQAPNPADV PKTKCQEFLL SQLPFVKSMA QAERRHLEVE 180
  181 VLALILEQER QEKATRKLGP KDLETVQSEY DEFLKAIRVK ELPADNLLSP AMDRFGISPH 240
  241 K

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [242-334]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IRPNVASANK RIRYNNACKG SNDVKIKIET AIEPKIKDTT KCDERPIETP RFVPLKSAKY  60
   61 YIKRCRIRLK RVEIDDYLPL ARIRRSRRPT LRT