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Protein Overview: CG5550-PA

General Information:
Name(s) found: CG5550-PA / FBpp0086184 [FlyBase]
Description(s) found:
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  • gi|24654259|ref|NP_611160.2| CG5550 [Drosophila melanogaster] [NCBI NR]
  • gi|21645253|gb|AAF57948.2| CG5550 [Drosophila melanogaster] [NCBI NR]
  • This gene is referred to in FlyBase by the symbol Dmel\CG5550 (CG5550, FBgn0034160). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:12704096..12705086. It has the cytological map location 53D10. An electronic pipeline based on InterPro domains suggests that it has the molecular function</span>: receptor binding. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process</span>: signal transduction. 2 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • >CG5550-PA translation from_gene[CG5550 CG5550 FBgn0034160] seq_release:3 mol_weight=27765 cds_boundaries:(2R:11,880,339..11,881,139[+]) aa_length:246 transcript_info:[CG5550-RA seq_release:3] gene_info:[gene symbol:CG5550 FBgn0034160 gene_boundaries:( [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9V7U5) CG5550 protein [DrosMelano7227.FASTAC.txt]
  • CG5550-PA [Drosophila melanogaster]gi|24654259|ref|NP_611160.2| CG5550-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=2R:join(12704119..12704726,12704790..12704922); ID=FBpp0086184; name=CG5550-PA; parent=FBgn0034160,FBtr0087033; dbxref=FlyBase:FBpp0086184,FlyBase_Annotation_IDs:CG5550-PA,GB_protein:AAF57948.2,REFSEQ:NP_611160,GB_protein:AAF57948; MD5=b [fly-100309-contam.fasta]
  • CG5550-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=2R:join(12704119..12704726,12704790..12704922); ID=FBpp0086184; name=CG5550-PA; parent=FBgn0034160,FBtr0087033; dbxref=FlyBase:FBpp0086184,FlyBase_Annotation_IDs:CG5550-PA,GB_protein:AAF57948.2,REFSEQ:NP_611160,GB_protein:AAF57948; MD5=ba5f3371fd638dbdfe593b81ab0b6f56; length=246; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2R:join(12704119..12704726,12704790..12704922); ID=FBpp0086184; name=CG5550-PA; parent=FBgn0034160,FBtr0087033; dbxref=FlyBase:FBpp0086184,FlyBase_Annotation_IDs:CG5550-PA,GB_protein:AAF57948.2,REFSEQ:NP_611160,GB_protein:AAF57948; MD5=ba5f3371fd638dbdfe593b81ab0b6f56; length=246; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • CG5550 OS=Drosophila melanogaster GN=CG5550 PE=4 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=2R:join(12704119..12704726,12704790..12704922); ID=FBpp0086184; name=CG5550-PA; parent=FBgn0034160,FBtr0087033; dbxref=FlyBase:FBpp0086184,FlyBase_Annotation_IDs:CG5550-PA,GB_protein:AAF57948.2,REFSEQ:NP_611160,GB_protein:AAF57948,FlyMine:FBpp0086184,modMine:FBpp0086184; MD5=ba5f3371fd638dbdfe593b81ab0b6f56; length=246; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • CG5550 OS=Drosophila melanogaster GN=CG5550-RA PE=2 SV=1 [UniProt_D_Melanogaster_07132012_07-13-2012_reversed.fasta]
  • type=protein; loc=2R:join(16816614..16817221,16817285..16817417); ID=FBpp0086184; name=CG5550-PA; parent=FBgn0034160,FBtr0087033; dbxref=FlyBase:FBpp0086184,FlyBase_Annotation_IDs:CG5550-PA,GB_protein:AAF57948.2,REFSEQ:NP_611160,GB_protein:AAF57948,FlyMine:FBpp0086184,modMine:FBpp0086184; MD5=ba5f3371fd638dbdfe593b81ab0b6f56; length=246; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2R:join(16816614..16817221,16817285..16817417); ID=FBpp0086184; name=CG5550-PA; parent=FBgn0034160,FBtr0087033; dbxref=FlyBase:FBpp0086184,FlyBase_Annotation_IDs:CG5550-PA,GB_protein:AAF57948.2,REFSEQ:NP_611160,GB_protein:AAF57948,FlyMine:FBpp0086184,modMine:FBpp0086184; MD5=ba5f3371fd638dbdfe593b81ab0b6f56; length=246; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • Isoform of A0A0B4K7T3, CG5550, isoform A OS=Drosophila melanogaster GN=CG5550-RA PE=2 SV=1 [DROME.fasta.20160308]
  • FBpp0086184 type=protein; loc=2R:join(16816614..16817221,16817285..16817417); ID=FBpp0086184; name=CG5550-PA; parent=FBgn0034160,FBtr0087033; dbxref=FlyBase:FBpp0086184,FlyBase_Annotation_IDs:CG5550-PA,GB_protein:AAF57948.2,REFSEQ:NP_611160,GB_protein:AAF57948,FlyMine:FBpp0086184,modMine:FBpp0086184; MD5=ba5f3371fd638dbdfe593b81ab0b6f56; length=246; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=2R:join(16816614..16817221,16817285..16817417); ID=FBpp0086184; name=CG5550-PA; parent=FBgn0034160,FBtr0087033; dbxref=FlyBase:FBpp0086184,FlyBase_Annotation_IDs:CG5550-PA,GB_protein:AAF57948.2,REFSEQ:NP_611160,GB_protein:AAF57948,UniProt/TrEMBL:A1ZAJ8,FlyMine:FBpp0086184,modMine:FBpp0086184; MD5=ba5f3371fd638dbdfe593b81ab0b6f56; length=246; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 246 amino acids

    Gene Ontology:
    Cellular Component: extracellular space [IEA]
    proteinaceous extracellular matrix [ISS]
    Biological Process: signal transduction [IEA]
    Molecular Function: receptor binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPICFALCV FSLGLFYLAS AEIGENVKIQ TYKKYSSSCK ELNPKKSGVQ KIQVGSDVIE  60
   61 VYCDVTIAGK GWLVVQRRVS VEENFYRNWT SYQTGFGDLK GNFFIGLNNL NKISSLQPQE 120
  121 LYIELVDFAG EKRYAHYSVF HVGNVYSNYP ITQLGAYSGT AGDSLSYHLY QPFSTFDRDN 180
  181 DNATINCAAR YMGAWWYREC LSSNLNGAYL GGNHTDPALF GSGIVWGEWK GFTYSYKTVN 240
  241 IMVRPK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..246] PSI-BLAST 64.30103 No description for 2j3fA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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