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Protein Overview: CG8079-PA

General Information:
Name(s) found: CG8079-PA / FBpp0086500 [FlyBase]
Description(s) found:
Found 21 descriptions.
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  • This gene is referred to in FlyBase by the symbol Dmel\CG8079 (CG8079, FBgn0034002). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:11105886..11111329. It has the cytological map location 51E7. An electronic pipeline based on InterPro domains suggests that it has the molecular function</span>: nucleic acid binding. The biological processes in which it is involved are not known. 2 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 601 amino acids

    Gene Ontology:
    Cellular Component: precatalytic spliceosome [IDA]
    Biological Process: nuclear mRNA splicing, via spliceosome [IC]
    Molecular Function: nucleic acid binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLPAEEEDL ADTVAKYDSI ELKSIQDLET CEQQQLLQYV EKLHGIIRKY DTKLASYKQK  60
   61 LLHYVSREEK VSCDKASQAT ESELQECQYS MENDEDTNKK DQPNDLSATD AFSFVDEMRQ 120
  121 AAKHAENLNN FVYEHTSGMY YDPKTGYYYN AEYGLYYDGN NGCYYSYDHA KDSYEFHSQA 180
  181 QVQANDAAKP ESEDEDLEVQ FDELGGVITD HETLKKIKAE KQKAKDQAEK SKRKAKKKKS 240
  241 KKHSKKRSKK ERRHKSKKRH RHSDDERSND AEEGELSQSS DSSSDSSNED SSSNTEDSSV 300
  301 PVFKAAGRFQ DIAKKYPPSL RIIVQETNVE SLKVGSLHLI TYKGGSLGRE GAHDVIIPDV 360
  361 NVSKCHLKFK YENKLGIYQC LDLGSRNGTI LNGSPMSSDA MDLVHGSVIT LGQTRLLCHV 420
  421 HEGNSTCGLC EPGLLIENSP PVVAAVASST ASVLSHKEQL KKLQRKYGLE NEKFVDTSGN 480
  481 GQSNYNDRAA TRRVQVGSST DKEKTEVACV NTEIGSSNKG FKMLSKLGWQ KGEKLGKTNA 540
  541 SAGLLEPINV VANEGTSGLG NSDPVLSSSR TIDKRKLANL KITQARYQRA SDMFGQSDDS 600
  601 D

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..194] MSA 7.201996 View MSA. No confident structure predictions are available.
    2 View Details [195..273] deduced N/A No confident structure predictions are available.
    3 View Details [274..432] PSI-BLAST 14.154902 No description for 2jpeA was found.
    4 View Details [433..601] MSA 10.246996 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle