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Protein Overview: Psc-PA, FBpp0311...

General Information:
Name(s) found: FBpp0311526 [FlyBase]
FBpp0311395 [FlyBase]
Psc-PA / FBpp0086911 [FlyBase]
Description(s) found:
Found 34 descriptions.
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  • type=protein; loc=2R:complement(8854023..8857686,8857827..8858030,8862009..8862099,8864822..8865668); ID=FBpp0311526; name=Psc-PC; parent=FBgn0005624,FBtr0345375; dbxref=FlyBase:FBpp0311526,FlyBase_Annotation_IDs:CG3886-PC; MD5=65661d8668489f3d755cea313f6f3835; length=1601; release=r5.56; species=Dmel; [FlyBase]
  • type=protein; loc=2R:complement(8854023..8857686,8857827..8858030,8862009..8862099,8864822..8865668); ID=FBpp0311395; name=Psc-PB; parent=FBgn0005624,FBtr0345196; dbxref=FlyBase:FBpp0311395,FlyBase_Annotation_IDs:CG3886-PB; MD5=65661d8668489f3d755cea313f6f3835; length=1601; release=r5.56; species=Dmel; [FlyBase]
  • The gene Posterior sex combs is referred to in FlyBase by the symbol Dmel\Psc (CG3886, FBgn0005624). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:8853815..8868494. It has the cytological map location 49E6. It is reported to have molecular function</span>: DNA binding. There is experimental evidence that it is involved in the biological process</span>: syncytial blastoderm mitotic cell cycle; chromatin remodeling. 45 alleles are reported. The phenotypes of these alleles are annotated with: embryonic head; embryonic abdomen; macrochaeta; embryonic epidermis; metathoracic leg; mesothoracic leg; alula; embryonic thorax; denticle belt; pigment cell. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 1601 amino acids

    Gene Ontology:
    Cellular Component: nucleus [NAS]
    intercalary heterochromatin [NAS]
    PRC1 complex [TAS]
    Biological Process: chromatin remodeling [IDA]
    syncytial blastoderm mitotic cell cycle [IMP]
    chromatin silencing [NAS]
    Molecular Function: DNA binding [NAS]
    zinc ion binding [IEA]
    protein binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMTPESKAIQ PAAATTKQTA EATATTTMAH TQQKSQLSTL AKTTTTTATN KAAKSVVSNA  60
   61 NSSGNNSSKK LALSQSQKTT TTTTPPTTTT TTTAAAAAEA TTNADKMQKQ QQLKQQLFAA 120
  121 CSIKVKSENT LATTANAALA AATTTTTTAT PALATGKAAK TILENGIKKE STPPAVESVE 180
  181 ASSSSSSSSS SSSSSSSSWP TTRRATSEDA SSNGGASADE EKSEEDPTAA VAASSTATTT 240
  241 SDLATTSRPR PVLLTAVNPH IICHLCQGYL INATTIVECL HSFCHSCLIN HLRKERFCPR 300
  301 CEMVINNAKP NIKSDTTLQA IVYKLVPGLY ERELMRKRAF YKDRPEEAAL ATPEQRGDDT 360
  361 EHLIFSPSDD MSLSLEYAEL GELKTDSEPE LVDTLRPRYL QCPAMCRVSH LKKFVYDKFE 420
  421 IDAQRFSIDI MYKVKTIVLL DYYTLMDIAY IYTWKRDAPM RFYYRVYESP QPLVKPAPRR 480
  481 VLPLKLEKQE RENQEQQLAV EVASSKVEPV SLPEDQKAEA SIKVEEQEST REIVKEVIKD 540
  541 VAATPPTETL KLVINRNMLD KREKSHSPQM SSKSSSKSSP CTPVSSPSEP NIKLKIDLSK 600
  601 QNSVTIIDMS DPERREIVKP LKPEKESRSK KKDKDGSPKS SSSSSSSSSG ERKRKSPSPL 660
  661 TVPPLTIRTE RIMSPSGVST LSPRVTSGAF SEDPKSEFLK SFALKPIKVK VESPERTLNN 720
  721 RAITPPSPSV QQSASPKSKG NNLDDSILMK PPSCMPPKSI ASSKRKSKEP VKAVSKKQKL 780
  781 SPPLPTVDFK IRLPVTNGNS SGTASPKIEK PLMPPPAKPP MLAPRKLQPS AQFAPPPSPI 840
  841 HHHAGVQMSA PGNRTPIAKR YQPILPKASR PNPFANIPND VNRLLKDAGT EIKSIGGGSV 900
  901 ENNSNAAQKP HLYGPKGESK MGPPALPATT PSQGNKNVGK QAGNLPMSAP PNKGNSSNNY 960
  961 LNLALFNSSK CKGKEAPPGC RTPMYTPNSP IYSPSSPQYV PSYNIPTMPT YKYTPKPTPN1020
 1021 SGSGNGGSGS YLQNMLGGGN GGSLGGLFPS PPTKSDQNTN PAQGGGGSSS ATQSGGNNGI1080
 1081 VNNNIYMPNE DAPEKQQVKV KSLLNSCNIN IPSSLSITIS RDNGDSSSPN NGQHPKHKSP1140
 1141 VNNYIEIVKL PDQPQDQVQA AKEAQKRQSP PAAVPGHLAA KLPPPPPSKA IPSPQHLVSR1200
 1201 MTPPQLPKVA TPPPPSSPRV ITPPKTSPPA NAAKVTPLKP VLTPTQVDKK TPSPEKRTAA1260
 1261 QMGSHSPTAS ENKSPKGGPA GVANSTGGAQ NGDPAAKKFR PILPRQNGMP ELAPKLPTLA1320
 1321 PFVGFNPLQN PAAGKKVPPS KKSPNAGAAA HQSGQQKLVN GGQSQPAQQK TSPPAQKNQQ1380
 1381 QVKKVSKNPT PPPPSLPAVG KMMPHPVMHS QNAPLSIASS ASAAAVASGQ LDLSNFLKEN1440
 1441 LRRVHAAQAA QAAQVAAAAN QSNMMYNLAQ MGHMTPAMYN YQQAYFREQL SRMQRVGNEV1500
 1501 FNDYLQKLKT AAATGGGGPV EGELKPMLPT VTLPSPGATP PAASPKTSPL PAGKLTAAAT1560
 1561 APQTKGNSSS GAANARQQTA ATGNNGATVP AASLPPATKS K

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..227] MSA 4.037993 View MSA. No confident structure predictions are available.
    2 View Details [228..392] PSI-BLAST 48.522879 No description for 2cklA was found.
    3 View Details [393..469] deduced N/A No confident structure predictions are available.
    4 View Details [470..570] deduced N/A No confident structure predictions are available.
    5 View Details [571..630] deduced N/A No confident structure predictions are available.
    6 View Details [631..757] deduced N/A No confident structure predictions are available.
    7 View Details [758..907] deduced N/A No confident structure predictions are available.
    8 View Details [908..1023] deduced N/A No confident structure predictions are available.
    9 View Details [1024..1211] deduced N/A No confident structure predictions are available.
    10 View Details [1212..1422] deduced N/A No confident structure predictions are available.
    11 View Details [1423..1601] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.92

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle