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Protein Overview: FBpp0305105, Nmd...

General Information:
Name(s) found: FBpp0305105 [FlyBase]
Nmda1-PF / FBpp0088817 [FlyBase]
Description(s) found:
Found 27 descriptions.
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  • type=protein; loc=2R:complement(8765160..8765519,8765578..8765826,8765890..8766231); ID=FBpp0305105; name=Nmda1-PI; parent=FBgn0013305,FBtr0332883; dbxref=REFSEQ:NP_001260929,GB_protein:AGB93462,FlyBase:FBpp0305105,FlyBase_Annotation_IDs:CG3798-PI; MD5=606c53045cab6327e0f99226b6a6e850; length=316; release=r5.56; species=Dmel; [FlyBase]
  • The gene N-methyl-D-aspartate receptor-associated protein is referred to in FlyBase by the symbol Dmel\Nmda1 (CG3798, FBgn0013305). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:8764596..8767328. It has the cytological map location 49D6. Based on sequence similarity, it is predicted to have molecular function</span>: N-methyl-D-aspartate selective glutamate receptor activity. The biological processes in which it is involved are not known. 8 alleles are reported. The phenotype of these alleles is annotated with: embryonic heart. It has 6 annotated transcripts and 6 annotated polypeptides. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 316 amino acids

    Gene Ontology:
    Cellular Component: N-methyl-D-aspartate selective glutamate receptor complex [ISS]
    Biological Process: NONE FOUND
    Molecular Function: N-methyl-D-aspartate selective glutamate receptor activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYFADPNQQ YNYGGGNPPQ GGYGGYPPQG GYPPQGPPQG YPPYAQGGAQ PYPQPYGQGP  60
   61 PPGGYAPQPG FIQPPPSAGG YGAYDDPESQ PKNFSFDDQS IRRGFIRKVY LILMGQLIVT 120
  121 FGAVALFVYH EGTKTFARNN MWLFWVALGV MLVTMLSMAC CESVRRQTPT NFIFLGLFTA 180
  181 AQSFLMGVSA TKYAPKEVLM AVGITAAVCL ALTIFALQTK YDFTMMGGIL IACMVVFLIF 240
  241 GIVAIFVKGK IITLVYASIG ALLFSVYLIY DTQLMMGGEH KYSISPEEYI FAALNLYLDI 300
  301 INIFMYILTI IGASRD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..129] PSI-BLAST 5.522879 Sec24
    2 View Details [130..316] Pfam 13.161151 No description for PF01027.11 was found. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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