Protein Overview: Syx6-PD

General Information:
Name(s) found:	Syx6-PD / FBpp0087205 [FlyBase]
Description(s) found: Found 22 descriptions. SHOW ALL	The gene Syntaxin 6 is referred to in FlyBase by the symbol Dmel\Syx6 (CG7736, FBgn0037084). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:7107046..7109987. It has the cytological map location 47D7-47E1. Based on sequence similarity, it is predicted to have molecular function</span>: SNAP receptor activity. Based on sequence similarity, it is predicted to be involved in the biological process</span>: synaptic vesicle docking during exocytosis. 4 alleles are reported. No phenotypic data is available. It has 3 annotated transcripts and 3 annotated polypeptides. [FlyBase]
Organism:	Drosophila melanogaster
Length:	323 amino acids
Gene Ontology:
Cellular Component:	membrane [IEA] plasma membrane [ISS][NAS]
Biological Process:	synaptic vesicle docking during exocytosis [ISS] vesicle-mediated transport [NAS] neurotransmitter secretion [NAS] Golgi vesicle transport [IEA]
Molecular Function:	protein binding [IEA] SNAP receptor activity [ISS][NAS]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLEDPFFVV KDEVFKALNK TRGLYLRWRE LGENGGTEAE WTTTELRNSL RSIEWDLEDL  60
   61 EDTISIVEKN PSKFRIDNRE LSSRRHFIDN TRDEVKQMKD KMSLNRSRDR DITAHQPLLD 120
  121 NDRHSPNHNH SIAIPNSNSN SNEYHQHPHN DRTYLVECPN GNSLINSGSQ VANTIAGTMS 180
  181 AAAAAASRHS GTKYSKLENA LDSPSHYGQT HHGGMDSPSH RYVGETVSIQ QRMIQGQDEQ 240
  241 LDMISDSIGT LKTVSRQIGV ELDEQAVMLD DFGNEFDTTE SKLDTTMKKV AKVLHMNNDK 300
  301 RQWAAILILS GLLLFVIILF IIL

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Searching the YRC Public Image Repository, found results:

Currently showing to of results.

[View Search in the YRC Public Image Repository]

Searching the YRC Public Image Repository, found no results.

Ginzu Version Information

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

Gene Ontology predictions

Term	Confidence	Notes
SNAP receptor activity	3.50393203740159	bayes_pls_golite062009
phosphatidic acid binding	2.19104724611902	bayes_pls_golite062009
binding	2.13344290488739	bayes_pls_golite062009
SNARE binding	1.85060343142976	bayes_pls_golite062009
transporter activity	1.74189664015129	bayes_pls_golite062009
protein binding	1.51700626946713	bayes_pls_golite062009
substrate-specific transporter activity	1.2360389745429	bayes_pls_golite062009
transmembrane transporter activity	1.13101548288086	bayes_pls_golite062009
protein transporter activity	0.81087535212264	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	0.398018181744571	bayes_pls_golite062009
extracellular ligand-gated ion channel activity	0.27873535382283	bayes_pls_golite062009
excitatory extracellular ligand-gated ion channel activity	0.27873535382283	bayes_pls_golite062009
ion transmembrane transporter activity	0.0981818568206971	bayes_pls_golite062009
phospholipid binding	0.0172309833091902	bayes_pls_golite062009

No functions predicted.

Source: Reynolds et al. 2008. Manuscript submitted

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..82]	PSI-BLAST	16.522879	Syntaxin 6, SNAP-25 homolog
2	View Details	[83..232]	FFAS03	2.79	No description for 2npsD was found.
3	View Details	[233..323]	PSI-BLAST	4.39794	No description for 2npsD was found.

Protein Overview: Syx6-PD

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: