YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: FBpp0304270, cag-PA

General Information:
Name(s) found: FBpp0304270 [FlyBase]
cag-PA / FBpp0087334 [FlyBase]
Description(s) found:
Found 29 descriptions.
SHOW ALL
  • type=protein; loc=2R:complement(6780740..6781304,6781362..6781474); ID=FBpp0304270; name=cag-PB; parent=FBgn0017414,FBtr0331937; dbxref=FlyBase:FBpp0304270,FlyBase_Annotation_IDs:CG12346-PB,REFSEQ:NP_001260876,GB_protein:AGB93409; MD5=b7431b0d6240c940ed62121c5acf9e63; length=225; release=r5.56; species=Dmel; [FlyBase]
  • The gene cag is referred to in FlyBase by the symbol Dmel\cag (CG12346, FBgn0017414). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:6780528..6781865. It has the cytological map location 47C5-47C6. An electronic pipeline based on InterPro domains suggests that it has the molecular function</span>: DNA binding. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process</span>: regulation of transcription. 5 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 225 amino acids

    Gene Ontology:
    Cellular Component: chromosome, centromeric region [IEA]
    Biological Process: regulation of transcription [IEA]
    Molecular Function: DNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSGRVRKPR TSLTLEEKME VIQSQERNKL SVRDLAKRFN IGKTQAADIL KHKQSIKEGL  60
   61 LSGELKLNQM RRNPLSQRGA QIDEMCFDWF SRVRTENIPI SGEMVRKKAK QLAVELGHSN 120
  121 FSASSGWLEK WRKRHNVRYN DTGDSLDLQE FEAILVKSEP ISNKDDCDEP YPVTLIEPIY 180
  181 STEEAMMQLA RLKEFAKDDY ASYQQLISLE NQWSWKWNIF KKELP

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..141] PSI-BLAST 25.0 DNA-binding domain of centromere binding protein B (CENP-B)
    2 View Details [142..225] deduced N/A Confident ab initio structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.334577365229545 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.0696342306231097 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle