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Protein Overview: CG12909-PA

General Information:
Name(s) found: CG12909-PA / FBpp0087437 [FlyBase]
Description(s) found:
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  • gi|7303763|gb|AAF58811.1| CG12909 [Drosophila melanogaster] [NCBI NR]
  • gi|223967465|emb|CAR93463.1| CG12909-PA [Drosophila melanogaster] [NCBI NR]
  • gi|223967463|emb|CAR93462.1| CG12909-PA [Drosophila melanogaster] [NCBI NR]
  • gi|223967461|emb|CAR93461.1| CG12909-PA [Drosophila melanogaster] [NCBI NR]
  • gi|223967457|emb|CAR93459.1| CG12909-PA [Drosophila melanogaster] [NCBI NR]
  • gi|223967455|emb|CAR93458.1| CG12909-PA [Drosophila melanogaster] [NCBI NR]
  • gi|223967453|emb|CAR93457.1| CG12909-PA [Drosophila melanogaster] [NCBI NR]
  • gi|223967451|emb|CAR93456.1| CG12909-PA [Drosophila melanogaster] [NCBI NR]
  • gi|223967449|emb|CAR93455.1| CG12909-PA [Drosophila melanogaster] [NCBI NR]
  • gi|223967447|emb|CAR93454.1| CG12909-PA [Drosophila melanogaster] [NCBI NR]
  • gi|223967443|emb|CAR93452.1| CG12909-PA [Drosophila melanogaster] [NCBI NR]
  • gi|19921968|ref|NP_610573.1| CG12909 [Drosophila melanogaster] [NCBI NR]
  • gi|17944269|gb|AAL48028.1| LD31988p [Drosophila melanogaster] [NCBI NR]
  • gi|116806050|emb|CAL26408.1| CG12909 [Drosophila melanogaster] [NCBI NR]
  • gi|116806048|emb|CAL26407.1| CG12909 [Drosophila melanogaster] [NCBI NR]
  • gi|116806044|emb|CAL26405.1| CG12909 [Drosophila melanogaster] [NCBI NR]
  • gi|116806040|emb|CAL26403.1| CG12909 [Drosophila melanogaster] [NCBI NR]
  • gi|116806036|emb|CAL26401.1| CG12909 [Drosophila melanogaster] [NCBI NR]
  • gi|116806034|emb|CAL26400.1| CG12909 [Drosophila melanogaster] [NCBI NR]
  • gi|116806032|emb|CAL26399.1| CG12909 [Drosophila melanogaster] [NCBI NR]
  • gi|116806030|emb|CAL26398.1| CG12909 [Drosophila melanogaster] [NCBI NR]
  • gi|116806028|emb|CAL26397.1| CG12909 [Drosophila melanogaster] [NCBI NR]
  • This gene is referred to in FlyBase by the symbol Dmel\CG12909 (CG12909, FBgn0033507). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:6197629..6198648. It has the cytological map location 47A1. Its molecular function is unknown. The biological processes in which it is involved are not known. 3 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • >CG12909-PA translation from_gene[CG12909 CG12909 FBgn0033507] seq_release:3 mol_weight=32109 cds_boundaries:(2R:5,370,868..5,371,710[+]) aa_length:281 transcript_info:[CG12909-RA seq_release:3] gene_info:[gene symbol:CG12909 FBgn0033507 gene_boundarie [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9V5J5) CG12909 protein (LD31988p) [DrosMelano7227.FASTAC.txt]
  • (AE003830) CG12909 gene product [Drosophila melanogaster] [yeastflysequest.fasta]
  • CG12909-PA [Drosophila melanogaster]gi|17944269|gb|AAL48028.1| LD31988p [Drosophila melanogaster]gi|19921968|ref|NP_610573.1| CG12909-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=2R:6197740..6198585; ID=FBpp0087437; name=CG12909-PA; parent=FBgn0033507,FBtr0088348; dbxref=FlyBase:FBpp0087437,FlyBase_Annotation_IDs:CG12909-PA,GB_protein:AAF58811.1,REFSEQ:NP_610573,GB_protein:AAF58811; MD5=1d0493cff664b55d76a1784b66 [fly-100309-contam.fasta]
  • CG12909 [Drosophila melanogaster] [nr-271106-contam.fasta]
  • CG12909-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • LD31988p [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=2R:6197740..6198585; ID=FBpp0087437; name=CG12909-PA; parent=FBgn0033507,FBtr0088348; dbxref=FlyBase:FBpp0087437,FlyBase_Annotation_IDs:CG12909-PA,GB_protein:AAF58811.1,REFSEQ:NP_610573,GB_protein:AAF58811; MD5=1d0493cff664b55d76a1784b666fdfc8; length=281; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2R:6197740..6198585; ID=FBpp0087437; name=CG12909-PA; parent=FBgn0033507,FBtr0088348; dbxref=FlyBase:FBpp0087437,FlyBase_Annotation_IDs:CG12909-PA,GB_protein:AAF58811.1,REFSEQ:NP_610573,GB_protein:AAF58811; MD5=1d0493cff664b55d76a1784b666fdfc8; length=281; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • CG12909 OS=Drosophila melanogaster GN=CG12909 PE=2 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=2R:6197740..6198585; ID=FBpp0087437; name=CG12909-PA; parent=FBgn0033507,FBtr0088348; dbxref=FlyBase:FBpp0087437,FlyBase_Annotation_IDs:CG12909-PA,GB_protein:AAF58811.1,REFSEQ:NP_610573,GB_protein:AAF58811,FlyMine:FBpp0087437,modMine:FBpp0087437; MD5=1d0493cff664b55d76a1784b666fdfc8; length=281; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=2R:10310235..10311080; ID=FBpp0087437; name=CG12909-PA; parent=FBgn0033507,FBtr0088348; dbxref=FlyBase:FBpp0087437,FlyBase_Annotation_IDs:CG12909-PA,GB_protein:AAF58811.1,REFSEQ:NP_610573,GB_protein:AAF58811,FlyMine:FBpp0087437,modMine:FBpp0087437; MD5=1d0493cff664b55d76a1784b666fdfc8; length=281; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2R:10310235..10311080; ID=FBpp0087437; name=CG12909-PA; parent=FBgn0033507,FBtr0088348; dbxref=FlyBase:FBpp0087437,FlyBase_Annotation_IDs:CG12909-PA,GB_protein:AAF58811.1,REFSEQ:NP_610573,GB_protein:AAF58811,FlyMine:FBpp0087437,modMine:FBpp0087437; MD5=1d0493cff664b55d76a1784b666fdfc8; length=281; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • CG12909 OS=Drosophila melanogaster GN=CG12909 PE=1 SV=1 [DROME.fasta.20160308]
  • FBpp0087437 type=protein; loc=2R:10310235..10311080; ID=FBpp0087437; name=CG12909-PA; parent=FBgn0033507,FBtr0088348; dbxref=FlyBase:FBpp0087437,FlyBase_Annotation_IDs:CG12909-PA,GB_protein:AAF58811.1,REFSEQ:NP_610573,GB_protein:AAF58811,FlyMine:FBpp0087437,modMine:FBpp0087437; MD5=1d0493cff664b55d76a1784b666fdfc8; length=281; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=2R:10310235..10311080; ID=FBpp0087437; name=CG12909-PA; parent=FBgn0033507,FBtr0088348; dbxref=FlyBase:FBpp0087437,FlyBase_Annotation_IDs:CG12909-PA,GB_protein:AAF58811.1,REFSEQ:NP_610573,GB_protein:AAF58811,UniProt/TrEMBL:Q7K0D3,FlyMine:FBpp0087437,modMine:FBpp0087437; MD5=1d0493cff664b55d76a1784b666fdfc8; length=281; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 281 amino acids

    Gene Ontology:
    Cellular Component: nucleolus [ISS]
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFFTCNICG ESVKKPAVEK HYQTRCRGKD KNVSCMDCLK DFYGEEYVAH IKCISEAQKY  60
   61 ASQSQGFAAK EPRNKNAQKQ ESWMDIIRSI LDSSEYNLTP AVRSAFQKLQ SVDNVPRKKA 120
  121 KFENFVGNCM RMPRNQATQV WDILEKELNK MKEAKQAELA RAKAEKIAEI QQKQKAEVEE 180
  181 EAPPKKKAKV ETTEDAAAEE TSNGVTSDFD WAAQLTKIVT KQADGIFLEK LRKKLLKKYA 240
  241 KHLSVEDLNE KQAKKFQKRF DKQLKLADSL EVEGEIVKIA S

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..63] PSI-BLAST 27.154902 Solution structure of the N-terminal zinc finger domain of mouse cell growth regulating nucleolar protein LYAR
    2 View Details [64..156] deduced N/A No confident structure predictions are available.
    3 View Details [157..281] MSA 4.033996 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.75384162940108 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.57776971811162 bayes_pls_golite062009
  • DNA binding
    		•  1.44675129642632 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.20428473898846 bayes_pls_golite062009
  • transcription factor activity
    		•  0.35678698773089 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle