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Protein Overview: FBpp0308005, cni...

General Information:
Name(s) found: FBpp0308005 [FlyBase]
cni-PB / FBpp0080406 [FlyBase]
cni-PA / FBpp0080405 [FlyBase]
Description(s) found:
Found 47 descriptions.
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  • type=protein; loc=2L:complement(16309903..16309930,16310000..16310143,16310267..16310379,16310441..16310590); ID=FBpp0308005; name=cni-PC; parent=FBgn0000339,FBtr0337082; dbxref=REFSEQ:NP_001260495,GB_protein:AGB93030,FlyBase:FBpp0308005,FlyBase_Annotation_IDs:CG5855-PC; MD5=4971f8da2f2172e9fd5495a4fbc333c5; length=144; release=r5.56; species=Dmel; [FlyBase]
  • The gene cornichon is referred to in FlyBase by the symbol Dmel\cni (CG5855, FBgn0000339). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2L:16309594..16310736. It has the cytological map location 35F1. Its molecular function is unknown. There is experimental evidence that it is involved in the biological process</span>: blastoderm segmentation; establishment of oocyte nucleus localization involved in oocyte dorsal/ventral axis specification; bicoid mRNA localization; intracellular mRNA localization; dorsal/ventral pattern formation; ER to Golgi vesicle-mediated transport; vesicle-mediated transport; anterior/posterior pattern formation; dorsal appendage formation; pole plasm oskar mRNA localization. 12 alleles are reported. The phenotypes of these alleles are annotated with 14 unique terms, many of which group under: organ system; peripheral nervous system; nervous system; egg; external compound sense organ; female germline cyst; adult segment; adult mesothoracic segment; primordium; cell part. It has 2 annotated transcripts and 2 annotated polypeptides. [FlyBase]
  • The gene cornichon is referred to in FlyBase by the symbol Dmel\cni (CG5855, FBgn0000339). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2L:16309594..16310736. It has the cytological map location 35F1. Its molecular function is unknown. There is experimental evidence that it is involved in the biological process</span>: blastoderm segmentation; establishment of oocyte nucleus localization involved in oocyte dorsal/ventral axis specification; bicoid mRNA localization; intracellular mRNA localization; dorsal/ventral pattern formation; ER to Golgi vesicle-mediated transport; vesicle-mediated transport; anterior/posterior pattern formation; dorsal appendage formation; pole plasm oskar mRNA localization. 12 alleles are reported. The phenotypes of these alleles are annotated with 14 unique terms, many of which group under: organ system; peripheral nervous system; nervous system; egg; external compound sense organ; female germline cyst; adult segment; adult mesothoracic segment; primordium; cell part. It has 2 annotated transcripts and 2 annotated polypeptides. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 144 amino acids

    Gene Ontology:
    Cellular Component: integral to plasma membrane [NAS]
    membrane [IEA]
    Biological Process: intracellular mRNA localization [IMP]
    blastoderm segmentation [IMP]
    anterior/posterior pattern formation [IMP]
    dorsal appendage formation [IMP]
    dorsal/ventral axis specification, ovarian follicular epithelium [NAS]
    dorsal/ventral axis specification [NAS]
    oocyte dorsal/ventral axis specification [NAS]
    dorsal/ventral pattern formation [IMP]
    oocyte anterior/posterior axis specification [NAS]
    gurken receptor signaling pathway [TAS]
    establishment of oocyte nucleus localization involved in oocyte dorsal/ventral axis specification [IMP]
    ER to Golgi vesicle-mediated transport [IMP]
    intracellular signaling pathway [IEA]
    vesicle-mediated transport [IMP]
    bicoid mRNA localization [IMP]
    pole plasm oskar mRNA localization [IMP]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFNFTAFTY IVALIGDAFL IFFAIFHVIA FDELKTDYKN PIDQCNSLNP LVLPEYLLHI  60
   61 FLNLLFLFCG EWFSLCINIP LIAYHIWRYK NRPVMSGPGL YDPTTVLKTD TLYRNMREGW 120
  121 IKLAVYLISF FYYIYGMVYS LIST

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

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    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..144] Pfam 80.619789 No description for PF03311.5 was found. Confident ab initio structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle