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Protein Overview: CG9548-PA

General Information:
Name(s) found: CG9548-PA / FBpp0078894 [FlyBase]
Description(s) found:
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  • gi|33302634|sp|Q9VMC8.2|PHF5_DROME RecName: Full=Uncharacterized protein CG9548 [NCBI NR]
  • gi|24582237|ref|NP_609038.1| CG9548 [Drosophila melanogaster] [NCBI NR]
  • gi|22945771|gb|AAF52393.2| CG9548 [Drosophila melanogaster] [NCBI NR]
  • gi|201065553|gb|ACH92186.1| FI02869p [Drosophila melanogaster] [NCBI NR]
  • Uncharacterized protein CG9548 OS=Drosophila melanogaster GN=CG9548 PE=3 SV=2 [Swiss-Prot]
  • This gene is referred to in FlyBase by the symbol Dmel\CG9548 (CG9548, FBgn0031822). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2L:6490151..6490828. It has the cytological map location 26D9. Its molecular function is unknown. The biological processes in which it is involved are not known. 2 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • >CG9548-PA translation from_gene[CG9548 CG9548 FBgn0031822] seq_release:3 mol_weight=12523 cds_boundaries:(2L:6,482,435..6,482,973[-]) aa_length:111 transcript_info:[CG9548-RA seq_release:3] gene_info:[gene symbol:CG9548 FBgn0031822 gene_boundaries:(2L [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9VMC8) Hypothetical protein CG9548 [DrosMelano7227.FASTAC.txt]
  • CG9548-PA [Drosophila melanogaster]gi|24582237|ref|NP_609038.1| CG9548-PA [Drosophila melanogaster]gi|33302634|sp|Q9VMC8|PHF5_DROME Hypothetical protein CG9548 [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=2L:complement(6490216..6490222,6490288..6490373,6490439..6490629,6490706..6490757); ID=FBpp0078894; name=CG9548-PA; parent=FBgn0031822,FBtr0079264; dbxref=FlyBase:FBpp0078894,FlyBase_Annotation_IDs:CG9548-PA,GB_protein:AAF52393.2,REFSEQ: [fly-100309-contam.fasta]
  • Hypothetical protein CG9548 [nr-271106-contam.fasta]
  • CG9548-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=2L:complement(6490216..6490222,6490288..6490373,6490439..6490629,6490706..6490757); ID=FBpp0078894; name=CG9548-PA; parent=FBgn0031822,FBtr0079264; dbxref=FlyBase:FBpp0078894,FlyBase_Annotation_IDs:CG9548-PA,GB_protein:AAF52393.2,REFSEQ:NP_609038,GB_protein:AAF52393; MD5=1b1fa5e59d31a189d26fcbf79226026f; length=111; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2L:complement(6490216..6490222,6490288..6490373,6490439..6490629,6490706..6490757); ID=FBpp0078894; name=CG9548-PA; parent=FBgn0031822,FBtr0079264; dbxref=FlyBase:FBpp0078894,FlyBase_Annotation_IDs:CG9548-PA,GB_protein:AAF52393.2,REFSEQ:NP_609038,GB_protein:AAF52393; MD5=1b1fa5e59d31a189d26fcbf79226026f; length=111; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • type=protein; loc=2L:complement(6490216..6490222,6490288..6490373,6490439..6490629,6490706..6490757); ID=FBpp0078894; name=CG9548-PA; parent=FBgn0031822,FBtr0079264; dbxref=FlyBase:FBpp0078894,FlyBase_Annotation_IDs:CG9548-PA,GB_protein:AAF52393.2,REFSEQ:NP_609038,GB_protein:AAF52393,FlyMine:FBpp0078894,modMine:FBpp0078894; MD5=1b1fa5e59d31a189d26fcbf79226026f; length=111; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=2L:complement(join(6490706..6490757,6490439..6490629,6490288..6490373,6490216..6490222)); ID=FBpp0078894; name=CG9548-PA; parent=FBgn0031822,FBtr0079264; dbxref=FlyBase:FBpp0078894,FlyBase_Annotation_IDs:CG9548-PA,GB_protein:AAF52393.2,REFSEQ:NP_609038,GB_protein:AAF52393,FlyMine:FBpp0078894,modMine:FBpp0078894; MD5=1b1fa5e59d31a189d26fcbf79226026f; length=111; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2L:complement(join(6490706..6490757,6490439..6490629,6490288..6490373,6490216..6490222)); ID=FBpp0078894; name=CG9548-PA; parent=FBgn0031822,FBtr0079264; dbxref=FlyBase:FBpp0078894,FlyBase_Annotation_IDs:CG9548-PA,GB_protein:AAF52393.2,REFSEQ:NP_609038,GB_protein:AAF52393,FlyMine:FBpp0078894,modMine:FBpp0078894; MD5=1b1fa5e59d31a189d26fcbf79226026f; length=111; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • FBpp0078894 type=protein; loc=2L:complement(join(6490706..6490757,6490439..6490629,6490288..6490373,6490216..6490222)); ID=FBpp0078894; name=CG9548-PA; parent=FBgn0031822,FBtr0079264; dbxref=FlyBase:FBpp0078894,FlyBase_Annotation_IDs:CG9548-PA,GB_protein:AAF52393.2,REFSEQ:NP_609038,GB_protein:AAF52393,FlyMine:FBpp0078894,modMine:FBpp0078894; MD5=1b1fa5e59d31a189d26fcbf79226026f; length=111; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=2L:complement(join(6490706..6490757,6490439..6490629,6490288..6490373,6490216..6490222)); ID=FBpp0078894; name=Phf5a-PA; parent=FBgn0031822,FBtr0079264; dbxref=FlyBase:FBpp0078894,FlyBase_Annotation_IDs:CG9548-PA,GB_protein:AAF52393.2,REFSEQ:NP_609038,GB_protein:AAF52393,UniProt/Swiss-Prot:Q9VMC8,FlyMine:FBpp0078894,modMine:FBpp0078894; MD5=1b1fa5e59d31a189d26fcbf79226026f; length=111; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 111 amino acids

    Gene Ontology:
    Cellular Component: catalytic step 2 spliceosome [IDA]
    precatalytic spliceosome [IDA]
    Biological Process: nuclear mRNA splicing, via spliceosome [IC]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKHHPDLIF CRKQPGVAIG RLCEKDDGKC VICDSYVRPC TLVRICDECN YGSYQGRCVI  60
   61 CGGPGVSDAY YCKSCTIQEK DRDGCPKIVN LGSSKTDLFY ERKKYGFKQN Y

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..111] Pfam 85.346787 No description for PF03660.5 was found. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle