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Protein Overview: gi|58477408, gi|...

General Information:
Name(s) found: gi|62646566 [NCBI NR]
gi|62079253 [NCBI NR]
gi|58477408 [NCBI NR]
gi|149033881 [NCBI NR]
Description(s) found:
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  • gi|62646566|ref|XP_575306.1| PREDICTED: similar to polymerase (RNA) III (DNA directed) polypeptide K [Rattus norvegicus] [NCBI NR]
  • gi|62079253|ref|NP_001014281.1| polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa [Rattus norvegicus] [NCBI NR]
  • gi|58477408|gb|AAH89990.1| Polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa [Rattus norvegicus] [NCBI NR]
  • gi|149033881|gb|EDL88664.1| rCG38533 [Rattus norvegicus] [NCBI NR]
  • Ensembl_locations(Chr-bp):3-164123325 [hmr_yeast5_DM3-1_pombe.fasta]
  • Tax_Id=10116 Hypothetical LOC366277 [EBI-IPI_rat_3.17_05-10-2006_con_reversed.fasta]
  • Tax_Id=10116 Hypothetical protein [EBI-IPI_rat_3.05_04-04-2005_origrev.fasta]
  • rCG38533 [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • polymerase (RNA) III (DNA directed) polypeptide K [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • Polymerase (RNA) III (DNA directed) polypeptide K [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa [Rattus norvegicus] [NCBI-RefSeq_human-rat_na_04-07-2009_con_reversed.fasta]
  • Tax_Id=10116 Gene_Symbol=Polr3k DNA-directed RNA polymerase subunit [rat-ipi-250309-contam.fasta]
  • DNA-directed RNA polymerase subunit OS=Rattus norvegicus GN=Polr3k [011711_HMR.fasta]
  • DNA-directed RNA polymerase subunit OS=Rattus norvegicus GN=Polr3k PE=2 SV=1 [UNIPROT_RAT_07-21-2011_reversed.fasta]
    • Organism: Rattus norvegicus
    Length: 108 amino acids

    Gene Ontology:
    Cellular Component: nucleus [UNKNOWN][IEA]
    cytoplasm [UNKNOWN][IEA]
    Biological Process: regulation of transcription [IEA]
    Molecular Function: DNA binding [IEA]
    zinc ion binding [IEA]
    DNA-directed RNA polymerase activity [IEA]
    transcription regulator activity [IEA]
    metal ion binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLFCPGCGN GLIVEEGQRC HRFACNTCPY VHNITRKVTN RKYPKLKEVD DVLGGAAAWE  60
   61 NVDSTAEPCP KCEHPRAYFM QLQTRSADEP MTTFYKCCNA QCGHRWRD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..108] PSI-BLAST 20.522879 RBP9 subunit of RNA polymerase II


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle