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Protein Overview: gi|62652445, gi|...

General Information:
Name(s) found: gi|62652445 [NCBI NR]
gi|62079131 [NCBI NR]
gi|55716057 [NCBI NR]
gi|149066364 [NCBI NR]
Description(s) found:
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  • gi|62652445|ref|XP_576271.1| PREDICTED: similar to Der1-like domain family, member 1 [Rattus norvegicus] [NCBI NR]
  • gi|62079131|ref|NP_001014224.1| Der1-like domain family, member 1 [Rattus norvegicus] [NCBI NR]
  • gi|55716057|gb|AAH85877.1| Der1-like domain family, member 1 [Rattus norvegicus] [NCBI NR]
  • gi|149066364|gb|EDM16237.1| rCG59470, isoform CRA_a [Rattus norvegicus] [NCBI NR]
  • Ensembl_locations(Chr-bp):7-83400889 [hmr_yeast5_DM3-1_pombe.fasta]
  • Tax_Id=10116 Hypothetical protein RGD1311835 [EBI-IPI_rat_3.17_05-10-2006_con_reversed.fasta]
  • Tax_Id=10116 Hypothetical LOC362912 [EBI-IPI_rat_3.13_12-01-2005_con_reversed.fasta]
  • Tax_Id=10116 Hypothetical protein [EBI-IPI_rat_3.05_04-04-2005_origrev.fasta]
  • Der1-like domain family, member 1 [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • rCG59470, isoform CRA_a [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • hypothetical protein LOC362912 [Rattus norvegicus] [nr-271106-contam.fasta]
  • Similar to RIKEN cDNA 1110021N07 [Rattus norvegicus] [nr-271106-contam.fasta]
  • Tax_Id=10116 Gene_Symbol=Derl1 Der1-like domain family, member 1 [rat-ipi-250309-contam.fasta]
  • Der1-like domain family, member 1 OS=Rattus norvegicus GN=Derl1 [011711_HMR.fasta]
  • Der1-like domain family, member 1 OS=Rattus norvegicus GN=Derl1 PE=2 SV=1 [UNIPROT_RAT_07-21-2011_reversed.fasta]
    • Organism: Rattus norvegicus
    Length: 251 amino acids

    Gene Ontology:
    Cellular Component: integral to endoplasmic reticulum membrane [UNKNOWN][IEA]
    endoplasmic reticulum [UNKNOWN][IEA]
    Biological Process: endoplasmic reticulum unfolded protein response [UNKNOWN][IEA]
    retrograde protein transport, ER to cytosol [UNKNOWN][IEA]
    ER-associated protein catabolic process [UNKNOWN][IEA]
    Molecular Function: protein binding [UNKNOWN][IEA]
    MHC class I protein binding [UNKNOWN][IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDIGDWFRS IPAITRYWFA ATVAVPLIGK LGIISPAYFF LWPEAFLYRF QIWRPFTATF  60
   61 YFPVGPGTGF LYLVNLYFLY QYSTRLEAGA FDGRPADYLF MLLFNWICIV ITGLAMDMQL 120
  121 LMIPLIMSVL YVWAQLNRDL IVSFWFGTRF KACYLPWVIL GFNYIIGGSV INELIGNLVG 180
  181 HLYFFLMFRY PMDLGGRNFL STPQFLYRWL PSRRGGVSGF GVPPASMRRA ADQNGGGGRH 240
  241 NWGQGFRLGD Q

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..194] PSI-BLAST 8.0 No description for 2ic8A was found.
    2 View Details [195..251] MSA 1.164994 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle