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Protein Overview: CYC_RAT

General Information:
Name(s) found: CYC_RAT [Swiss-Prot]
Description(s) found:
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  • gi|6978725|ref|NP_036971.1| cytochrome c, somatic [Rattus norvegicus] [NCBI NR]
  • pir||CCRT cytochrome c [validated] - rat [NCBI NR]
  • gi|57870614|gb|AAH89051.1| Cytochrome c, somatic [Rattus norvegicus] [NCBI NR]
  • gi|51858627|gb|AAH81849.1| Cytochrome c, somatic [Rattus norvegicus] [NCBI NR]
  • gi|51702227|sp|P62898.2|CYC_RAT RecName: Full=Cytochrome c, somatic [NCBI NR]
  • gi|203723|gb|AAA41014.1| somatic cytochrome c [NCBI NR]
  • gi|203699|gb|AAA21711.1| cytochrome c [Rattus norvegicus] [NCBI NR]
  • gi|149033395|gb|EDL88196.1| rCG52466 [Rattus norvegicus] [NCBI NR]
  • Cytochrome c, somatic OS=Rattus norvegicus GN=Cycs PE=1 SV=2 [Swiss-Prot]
  • Ensembl_locations(Chr-bp):4-83483969;18-34538153 cytochrome c, somatic [hmr_yeast5_DM3-1_pombe.fasta]
  • cytochrome c, somatic; Cytochrome C, expressed in somatic tissues; Cytochrome C expressed in somatic tissues [HMR_022704-rand.fasta]
  • cytochrome c, somatic [Rattus norvegicus]gi|6681095|ref|NP_031834.1| cytochrome c, somatic [Mus musculus]gi|51858627|gb|AAH81849.1| Cytochrome c, somatic [Rattus norvegicus]gi|51830829|ref|XP_489575.1| similar to Cytochrome c, somatic [Mus musculus]gi [nrdb_11152004_Chlamydomonas]
  • (NM_012839) cytochrome c, somatic; Cytochrome C, expressed in somatic tissues [Rattus norvegicus] [NCBI-RefSeq_human-mouse-rat_na_10-18-2006_con_reversed.fasta]
  • Cytochrome c, somatic [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • cytochrome c, somatic [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • rCG52466 [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • Cytochrome c, somatic [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • cytochrome c [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • somatic cytochrome c [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • Tax_Id=10116 CYTOCHROME C, SOMATIC [Xentr4_EBI-IPI_human_mouse_rat_Xenopus_tropicalis_laevis_con_reversed.fasta]
  • Tax_Id=10116 Gene_Symbol=Cycs Cytochrome c, somatic [rat-ipi-250309-contam.fasta]
  • Cytochrome c, somatic OS=Rattus norvegicus GN=Cycs [011711_HMR.fasta]
    • Organism: Rattus norvegicus
    Length: 105 amino acids

    Gene Ontology:
    Cellular Component: nucleus [UNKNOWN]
    soluble fraction [UNKNOWN][IDA]
    mitochondrial respiratory chain [IC]
    mitochondrial matrix [IEA]
    mitochondrion [UNKNOWN][IDA]
    cytosol [UNKNOWN][IDA]
    mitochondrial inner membrane [TAS]
    Biological Process: response to oxidative stress [IDA]
    DNA fragmentation involved in apoptosis [UNKNOWN]
    apoptosis [UNKNOWN][IMP]
    positive regulation of apoptosis [UNKNOWN][IEA]
    mitochondrial electron transport, cytochrome c to oxygen [IDA]
    electron transport chain [IEA]
    transport [IEA]
    activation of caspase activity by cytochrome c [UNKNOWN][TAS]
    glial cell apoptosis [IEP]
    hydrogen peroxide metabolic process [UNKNOWN][IEA]
    Molecular Function: protein binding [UNKNOWN]
    electron transporter, transferring electrons from CoQH2-cytochrome c reductase complex and cytochrome c oxidase complex activity [UNKNOWN]
    metal ion binding [IEA]
    electron carrier activity [IDA]
    lipid binding [TAS]
    heme binding [UNKNOWN][IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDVEKGKKI FVQKCAQCHT VEKGGKHKTG PNLHGLFGRK TGQAAGFSYT DANKNKGITW  60
   61 GEDTLMEYLE NPKKYIPGTK MIFAGIKKKG ERADLIAYLK KATNE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..105] PSI-BLAST 35.221849 No description for 2aiuA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle