YRC Public Data Repository - Protein Structure Prediction

Protein:	CYC_RAT
Organism:	Rattus norvegicus
Length:	105 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CYC_RAT.

Description	E-value	Query Range	Subject Range
gi\|89272026 - gi\|89272026\|emb\|CAJ83237.1\| cytochrome c, somatic [Xenopus tropicalis]	150.0	[0..1]	[105..8]
CYC_DANRE - Cytochrome c OS=Danio rerio GN=cyc PE=3 SV=3	148.0	[0..1]	[104..1]
gi\|26353026 - gi\|26353026\|dbj\|BAC40143.1\| unnamed protein product [Mus musculus]	146.0	[0..1]	[105..1]
CYC1A_XENLA - Cytochrome c, somatic A OS=Xenopus laevis GN=cycs-a PE=3 SV=3	146.0	[0..1]	[105..1]
CYC_SHEEP - Cytochrome c OS=Ovis aries GN=CYCS PE=1 SV=2 CYC_BOVIN - Cytochrome c OS=Bos taurus GN=CYCS PE=1 SV=2 CYC_PIG - Cytochrome c OS=Sus scrofa GN=CYCS PE=1 SV=2	146.0	[0..1]	[105..1]
gi\|108879930, gi... - gi\|94468578\|gb\|ABF18138.1\| mitochondrial cytochrome c [Aedes aegypti], gi\|157106248\|ref\|XP_001649238...	145.0	[0..2]	[104..6]
CYC_SCHGR - (P00040) Cytochrome c	145.0	[0..2]	[103..5]
gi\|50732700 - gi\|50732700\|ref\|XP_418723.1\| PREDICTED: similar to cytochrome C [Gallus gallus]	145.0	[0..1]	[105..152]
CYC_HIPAM - (P00007) Cytochrome c	145.0	[0..2]	[105..1]

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Predicted Domain #1

Region A:
Residues: [1-105]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDVEKGKKI FVQKCAQCHT VEKGGKHKTG PNLHGLFGRK TGQAAGFSYT DANKNKGITW  60
   61 GEDTLMEYLE NPKKYIPGTK MIFAGIKKKG ERADLIAYLK KATNE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.221849
Match:	2aiuA
Description:	No description for 2aiuA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits