Protein Overview: SCFD1_RAT

General Information:
Name(s) found:	SCFD1_RAT [Swiss-Prot]
Description(s) found: SHOW ONLY BEST	gi\|9507019\|ref\|NP_062237.1\| sec1 family domain containing 1 [Rattus norvegicus] [NCBI NR] gi\|51316554\|sp\|Q62991.1\|SCFD1_RAT RecName: Full=Sec1 family domain-containing protein 1; AltName: Full=Syntaxin-binding protein 1-like 2; AltName: Full=Vesicle transport-related protein Ra410; AltName: Full=Sly1p [NCBI NR] gi\|2780341\|dbj\|BAA24276.1\| vesicle transport-related protein (RA410) [Rattus norvegicus] [NCBI NR] gi\|149051201\|gb\|EDM03374.1\| sec1 family domain containing 1, isoform CRA_a [Rattus norvegicus] [NCBI NR] gi\|1377856\|gb\|AAC52636.1\| rsly1p [NCBI NR] (Q62991) Sec1 family domain containing protein 1 (Syntaxin binding protein 1-like 2) (Vesicle transport-related protein Ra410) (Sly1p) [Swiss-Prot] Sec1 family domain-containing protein 1 OS=Rattus norvegicus GN=Scfd1 PE=1 SV=1 [Swiss-Prot] Ensembl_locations(Chr-bp):6-64162793;6-64162793 RSLY1P [hmr_yeast5_DM3-1_pombe.fasta] vesicle transport-related [HMR_022704-rand.fasta] sec1 family domain containing 1 [Rattus norvegicus]gi\|2780341\|dbj\|BAA24276.1\| vesicle transport-related protein (RA410) [Rattus norvegicus]gi\|1377856\|gb\|AAC52636.1\| rsly1pgi\|51316554\|sp\|Q62991\|SFD1_RAT Sec1 family domain containing protein 1 (Syntaxin [nrdb_11152004_Chlamydomonas] Tax_Id=10116 Sec1 family domain-containing protein 1 [EBI-IPI_rat_3.17_05-10-2006_con_reversed.fasta] Tax_Id=10116 Sec1 family domain containing protein 1 [EBI-IPI_rat_3.13_12-01-2005_con_reversed.fasta] (NM_019364) vesicle transport-related [Rattus norvegicus] [NCBI-RefSeq_human-mouse-rat_na_10-18-2006_con_reversed.fasta] Sec1 family domain-containing protein 1 (Syntaxin-binding protein 1-like 2) (Vesicle transport-related protein Ra410) (Sly1p) [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta] sec1 family domain containing 1 [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta] sec1 family domain containing 1, isoform CRA_a [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta] vesicle transport-related protein (RA410) [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta] rsly1p [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta] Tax_Id=10116 SEC1 FAMILY DOMAIN CONTAINING PROTEIN 1 [Xentr4_EBI-IPI_human_mouse_rat_Xenopus_tropicalis_laevis_con_reversed.fasta] Tax_Id=10116 Gene_Symbol=Scfd1 Sec1 family domain-containing protein 1 [rat-ipi-250309-contam.fasta] Sec1 family domain-containing protein 1 OS=Rattus norvegicus GN=Scfd1 [011711_HMR.fasta]
Organism:	Rattus norvegicus
Length:	637 amino acids
Gene Ontology:
Cellular Component:	endoplasmic reticulum membrane [IEA] Golgi transport complex [IDA] cis-Golgi network [UNKNOWN][IEA] cytoplasm [IEA] Golgi cisterna membrane [IEA] endoplasmic reticulum [IEA] Golgi apparatus [IEA] Golgi-associated vesicle [IDA] plasma membrane [IDA]
Biological Process:	ER to Golgi vesicle-mediated transport [TAS] response to hypoxia [IEP] vesicle-mediated transport [IEA] regulation of ER to Golgi vesicle-mediated transport [IMP] retrograde vesicle-mediated transport, Golgi to ER [IMP] vesicle docking during exocytosis [IEA] protein transport [IEA] post-Golgi vesicle-mediated transport [IDA] response to toxin [UNKNOWN][IEA]
Molecular Function:	protein binding [IPI] syntaxin binding [TAS] protein N-terminus binding [IPI] syntaxin-5 binding [IDA]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGSKMAASI RERQTVALKR MLNFNVPHVK NSPGEPVWKV LIYDRFGQDI ISPLLSVKEL  60
   61 RDMGITLHLL LHSDRDPIRD VPAVYFVMPT EENIDRLCQD LRNQLYESYY LNFISAISRS 120
  121 KLEDIANAAL AANAVTQVAK VFDQYLNFIT LEEDMFVLCN QNKELVSYRA INRPDITDTE 180
  181 METVMDTIVD SLFCFFVTLG AVPIIRCSRG TAAEMVAVKL DKKLRENLRD ARNSLFTGDP 240
  241 LGTGQFSFQR PLLVLVDRNI DLATPLHHTW TYQALVHDVL DFHLNRVNLE ESTGVENSPT 300
  301 GARPKRKNKK SYDLTPVDKF WQKHKGSPFP EVAESVQQEL ESYRAQEDEV KRLKSIMGLE 360
  361 GEDEGAISML SDNTAKLTSA VSSLPELLEK KRLIDLHTNV ATAVLEHIKA RKLDVYFEYE 420
  421 EKIMSKTTLD KSLLDVISDP DAGTPEDKMR LFLIYYISAQ QAPSEVDLEQ YKKALTDAGC 480
  481 NLSPLQYIKQ WKAFAKMAST PASYGNTTTK PMGLLSRVMN TGSQFVMEGV KNLVLKQQNL 540
  541 PVTRILDNLM EMKSNPETDD YRYFDPKMLR SNDSSVPRNK SPFQEAIVFV VGGGNYIEYQ 600
  601 NLVDYIKGKQ GKHILYGCSE IFNATQFIKQ LSQLGQK

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.98

Protein Overview: SCFD1_RAT

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: