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Protein Overview: XCL1_RAT

General Information:
Name(s) found: XCL1_RAT [Swiss-Prot]
Description(s) found:
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  • gi|886018|gb|AAA69478.1| lymphotactin [NCBI NR]
  • gi|19705461|ref|NP_599188.1| small inducible cytokine subfamily C, member 1 (lymphotactin) [Rattus norvegicus] [NCBI NR]
  • gi|1708873|sp|P51672.1|XCL1_RAT RecName: Full=Lymphotactin; AltName: Full=C motif chemokine 1; AltName: Full=Cytokine SCM-1; AltName: Full=Small-inducible cytokine C1; Flags: Precursor [NCBI NR]
  • Lymphotactin OS=Rattus norvegicus GN=Xcl1 PE=3 SV=1 [Swiss-Prot]
  • (P51672) Lymphotactin precursor (XCL1) (Cytokine SCM-1) (Small inducible cytokine C1) [Swiss-Prot]
  • Ensembl_locations(Chr-bp):13-71450549 Lymphotactin precursor [hmr_yeast5_DM3-1_pombe.fasta]
  • small inducible cytokine subfamily C, member 1 (lymphotactin) [HMR_022704-rand.fasta]
  • small inducible cytokine subfamily C, member 1 (lymphotactin) [Rattus norvegicus]gi|886018|gb|AAA69478.1| lymphotactingi|1708873|sp|P51672|SYC1_RAT Lymphotactin precursor (XCL1) (Cytokine SCM-1) (Small inducible cytokine C1) [nrdb_11152004_Chlamydomonas]
  • Tax_Id=10116 Lymphotactin precursor [EBI-IPI_rat_3.17_05-10-2006_con_reversed.fasta]
  • (NM_134361) small inducible cytokine subfamily C, member 1 (lymphotactin) [Rattus norvegicus] [NCBI-RefSeq_human-mouse-rat_na_10-18-2006_con_reversed.fasta]
  • Lymphotactin precursor (C motif chemokine 1) (Cytokine SCM-1) (Small-inducible cytokine C1) [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • small inducible cytokine subfamily C, member 1 (lymphotactin) [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • lymphotactin [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • Tax_Id=10116 LYMPHOTACTIN PRECURSOR [Xentr4_EBI-IPI_human_mouse_rat_Xenopus_tropicalis_laevis_con_reversed.fasta]
  • Lymphotactin precursor (XCL1) (Cytokine SCM-1) (Small inducible cytokine C1) [nr-271106-contam.fasta]
  • Tax_Id=10116 Gene_Symbol=Xcl1 Lymphotactin [rat-ipi-250309-contam.fasta]
  • Lymphotactin OS=Rattus norvegicus GN=Xcl1 [011711_HMR.fasta]
  • Lymphotactin OS=Rattus norvegicus GN=Xcl1 PE=2 SV=1 [UNIPROT_RAT_07-21-2011_reversed.fasta]
    • Organism: Rattus norvegicus
    Length: 114 amino acids

    Gene Ontology:
    Cellular Component: extracellular space [IEA]
    extracellular region [IEA]
    Biological Process: chemotaxis [UNKNOWN][IEA]
    immune response [IEA]
    release of sequestered calcium ion into cytosol [UNKNOWN][IEA]
    Molecular Function: chemokine activity [IEA][TAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLLLLTFLG VCCFAAWVVE GVGTEVLQES ICVSLRTQRL PVQKIKTYTI KEGAMRAVIF  60
   61 VTKRGLRICA DPQAKWVKTA IKTVDGRASA SKSKAETIPT QAQRSASTAV TLTG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..114] PSI-BLAST 20.69897 Lymphotactin


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle