YRC Public Data Repository - Protein Structure Prediction

Protein:	XCL1_RAT
Organism:	Rattus norvegicus
Length:	114 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for XCL1_RAT.

Description	E-value	Query Range	Subject Range
gi\|74136447, gi\|... - gi\|74136447\|ref\|NP_001028119.1\| chemokine (C motif) ligand 1 [Macaca mulatta], gi\|25987932\|gb\|AAN760...	115.0	[0..1]	[114..1]
XCL1 - chemokine (C motif) ligand 1	115.0	[0..1]	[114..1]
gi\|60832995 - gi\|60832995\|gb\|AAX37032.1\| chemokine (C motif) ligand 2 [synthetic construct]	115.0	[0..1]	[114..1]
gi\|2144879, gi\|5... - gi\|595909\|gb\|AAA56752.1\| lymphotactin, pir\|\|ETMSL lymphotactin precursor - mouse	115.0	[0..1]	[114..1]
gi\|114565221 - gi\|114565221\|ref\|XP_524955.2\| PREDICTED: similar to CD8+T cell specific protein [Pan troglodytes]	115.0	[0..1]	[114..1]
gi\|73961393 - gi\|73961393\|ref\|XP_547477.2\| PREDICTED: similar to Cytokine SCM-1 beta precursor (XCL2) (XC chemokin...	106.0	[0..1]	[113..1]
gi\|164665382, gi... - gi\|57527998\|ref\|NP_001009579.1\| chemokine (C-C motif) ligand 3-like 1 [Sus scrofa], gi\|49354682\|gb\|A...	106.0	[0..1]	[85..1]

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Predicted Domain #1

Region A:
Residues: [1-114]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLLLLTFLG VCCFAAWVVE GVGTEVLQES ICVSLRTQRL PVQKIKTYTI KEGAMRAVIF  60
   61 VTKRGLRICA DPQAKWVKTA IKTVDGRASA SKSKAETIPT QAQRSASTAV TLTG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.69897
Match:	1j8iA
Description:	Lymphotactin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits