YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: H4_RAT

General Information:
Name(s) found: H4_RAT [Swiss-Prot]
Description(s) found:
SHOW ONLY BEST
  • gi|72679585|gb|AAI00620.1| Histone cluster 1, H4b [Rattus norvegicus] [NCBI NR]
  • gi|62648281|ref|XP_575704.1| PREDICTED: similar to germinal histone H4 gene [Rattus norvegicus] [NCBI NR]
  • gi|62644030|ref|XP_227462.3| PREDICTED: similar to germinal histone H4 gene [Rattus norvegicus] [NCBI NR]
  • gi|60593328|gb|AAX28930.1| histone H4 variant H4-v.1 [Rattus norvegicus] [NCBI NR]
  • gi|56349|emb|CAA31906.1| unnamed protein product [Rattus norvegicus] [NCBI NR]
  • gi|51317315|sp|P62804.2|H4_RAT RecName: Full=Histone H4; Contains: RecName: Full=Osteogenic growth peptide; Short=OGP [NCBI NR]
  • ref|XP_344599.1| similar to germinal histone H4 gene [Rattus norvegicus] [NCBI NR]
  • ref|XP_225391.1| similar to germinal histone H4 gene [Rattus norvegicus] [NCBI NR]
  • ref|XP_225373.1| similar to germinal histone H4 gene [Rattus norvegicus] [NCBI NR]
  • gi|27686283|ref|XP_225382.1| PREDICTED: similar to germinal histone H4 gene [Rattus norvegicus] [NCBI NR]
  • pir||HSRT4 histone H4 - rat [NCBI NR]
  • gi|204601|gb|AAA60735.1| histone H4 [Rattus norvegicus] [NCBI NR]
  • gi|204552|gb|AAA41306.1| histone H4 [NCBI NR]
  • gi|183986773|ref|NP_001116941.1| histone cluster 2, H4 [Rattus norvegicus] [NCBI NR]
  • gi|149031628|gb|EDL86595.1| rCG45201 [Rattus norvegicus] [NCBI NR]
  • gi|149031615|gb|EDL86582.1| rCG45210 [Rattus norvegicus] [NCBI NR]
  • gi|149031608|gb|EDL86575.1| rCG45142 [Rattus norvegicus] [NCBI NR]
  • gi|149031598|gb|EDL86565.1| rCG45260 [Rattus norvegicus] [NCBI NR]
  • gi|149030601|gb|EDL85638.1| histone 2, H4 (predicted) [Rattus norvegicus] [NCBI NR]
  • gi|149029295|gb|EDL84562.1| rCG63094 [Rattus norvegicus] [NCBI NR]
  • gi|149029294|gb|EDL84561.1| rCG23088 [Rattus norvegicus] [NCBI NR]
  • gi|12083635|ref|NP_073177.1| histone cluster 1, H4b [Rattus norvegicus] [NCBI NR]
  • gi|109505977|ref|XP_001061900.1| PREDICTED: similar to germinal histone H4 gene [Rattus norvegicus] [NCBI NR]
  • gi|109505975|ref|XP_001061844.1| PREDICTED: similar to germinal histone H4 gene [Rattus norvegicus] [NCBI NR]
  • gi|109505825|ref|XP_001072336.1| PREDICTED: similar to germinal histone H4 gene [Rattus norvegicus] [NCBI NR]
  • gi|109505807|ref|XP_001071818.1| PREDICTED: similar to germinal histone H4 gene [Rattus norvegicus] [NCBI NR]
  • gi|109505803|ref|XP_001071605.1| PREDICTED: similar to germinal histone H4 gene [Rattus norvegicus] [NCBI NR]
  • gi|109505790|ref|XP_001071272.1| PREDICTED: similar to germinal histone H4 gene [Rattus norvegicus] [NCBI NR]
  • gi|109504963|ref|XP_001057149.1| PREDICTED: similar to germinal histone H4 gene [Rattus norvegicus] [NCBI NR]
  • gi|109504938|ref|XP_001055696.1| PREDICTED: similar to germinal histone H4 gene [Rattus norvegicus] [NCBI NR]
  • gi|109504929|ref|XP_001055174.1| PREDICTED: similar to germinal histone H4 gene [Rattus norvegicus] [NCBI NR]
  • gi|109474415|ref|XP_001072499.1| PREDICTED: similar to germinal histone H4 gene [Rattus norvegicus] [NCBI NR]
  • gi|109474409|ref|XP_001072344.1| PREDICTED: similar to germinal histone H4 gene [Rattus norvegicus] [NCBI NR]
  • gi|109472795|ref|XP_578415.2| PREDICTED: similar to germinal histone H4 gene [Rattus norvegicus] [NCBI NR]
  • gi|109467221|ref|XP_001062199.1| PREDICTED: similar to germinal histone H4 gene [Rattus norvegicus] [NCBI NR]
  • Histone H4 OS=Rattus norvegicus GN=Hist1h4b PE=1 SV=2 [Swiss-Prot]
  • Ensembl_locations(Chr-bp):4-180027065;4-179990051;17-51098935;17-51981365;17-52203997;17-52211800;17-52263711;17-52281443;2-184508741;17-50655682 germinal histone H4 gene [hmr_yeast5_DM3-1_pombe.fasta]
  • similar to germinal histone H4 gene [HMR_022704-rand.fasta]
  • germinal histone H4 gene [HMR_022704-rand.fasta]
  • similar to germinal histone H4 gene [Rattus norvegicus]gi|34876388|ref|XP_344599.1| similar to germinal histone H4 gene [Rattus norvegicus]gi|27686283|ref|XP_225382.1| similar to germinal histone H4 gene [Rattus norvegicus]gi|27686379|ref|XP_225373.1| [nrdb_11152004_Chlamydomonas]
  • (NM_022686) germinal histone H4 gene [Rattus norvegicus] [NCBI-RefSeq_human-mouse-rat_na_10-18-2006_con_reversed.fasta]
  • Histone H4 [Contains: Osteogenic growth peptide (OGP)] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • histone cluster 2, H4 [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • histone cluster 1, H4b [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • rCG45201 [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • rCG45210 [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • rCG45142 [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • rCG45260 [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • histone 2, H4 (predicted) [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • rCG63094 [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • rCG23088 [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • Histone cluster 1, H4b [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • histone H4 variant H4-v.1 [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • PREDICTED: similar to germinal histone H4 gene [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • unnamed protein product [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • histone H4 [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • histone H4 [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • Tax_Id=10116 GERMINAL HISTONE H4 GENE [Xentr4_EBI-IPI_human_mouse_rat_Xenopus_tropicalis_laevis_con_reversed.fasta]
  • Germinal histone H4 gene [Rattus norvegicus] [nr-271106-contam.fasta]
  • germinal histone H4 [Rattus norvegicus] [nr-271106-contam.fasta]
  • Tax_Id=10116 Gene_Symbol=RGD1565073;Hist1h4b;Hist1h4m;RGD1562378;LOC682518;LOC684745;LOC684621;LOC679983;Hist2h4;LOC680097;LOC680430;LOC684887 Isoform Histone H4 of Histone H4 [rat-ipi-250309-contam.fasta]
  • Isoform Histone H4 of Histone H4 OS=Rattus norvegicus GN=Hist1h4b [011711_HMR.fasta]
    • Organism: Rattus norvegicus
    Length: 103 amino acids

    Gene Ontology:
    Cellular Component: nucleus [UNKNOWN][IEA]
    chromosome [IEA]
    nucleosome [IEA]
    nucleoplasm [UNKNOWN]
    Biological Process: ossification [IEA]
    multicellular organismal development [IEA]
    cell differentiation [IEA]
    negative regulation of megakaryocyte differentiation [UNKNOWN][IEA]
    nucleosome assembly [IEA]
    Molecular Function: DNA binding [IEA][TAS]
    protein binding [UNKNOWN][IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGRGKGGKG LGKGGAKRHR KVLRDNIQGI TKPAIRRLAR RGGVKRISGL IYEETRGVLK  60
   61 VFLENVIRDA VTYTEHAKRK TVTAMDVVYA LKRQGRTLYG FGG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..103] PSI-BLAST 34.30103 Histone H4

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.581886805340955 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle