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Protein Overview: PHF5A_RAT

General Information:
Name(s) found: PHF5A_RAT [Swiss-Prot]
Description(s) found:
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  • gi|46576678|sp|P83871.1|PHF5A_RAT RecName: Full=PHD finger-like domain-containing protein 5A; Short=PHD finger-like domain protein 5A; AltName: Full=Splicing factor 3B-associated 14 kDa protein; AltName: Full=SF3b14b [NCBI NR]
  • gi|20302071|ref|NP_620243.1| PHD-finger 5A [Rattus norvegicus] [NCBI NR]
  • gi|20162519|gb|AAM14623.1|AF495522_1 transcription factor INI [Rattus norvegicus] [NCBI NR]
  • gi|195539714|gb|AAI68144.1| PHD finger protein 5A [Rattus norvegicus] [NCBI NR]
  • gi|149065825|gb|EDM15698.1| rCG59500 [Rattus norvegicus] [NCBI NR]
  • PHD finger-like domain-containing protein 5A OS=Rattus norvegicus GN=Phf5a PE=2 SV=1 [Swiss-Prot]
  • (P83871) PHD finger-like domain protein 5A (Splicing factor 3B associated 14 kDa protein) (SF3b14b) [Swiss-Prot]
  • Ensembl_locations(Chr-bp):7-110043428;7-109997072 transcription factor INI [hmr_yeast5_DM3-1_pombe.fasta]
  • transcription factor INI [HMR_022704-rand.fasta]
  • transcription factor INI [Rattus norvegicus]gi|27545283|ref|NP_775373.1| PHD finger protein 5A [Danio rerio]gi|20162519|gb|AAM14623.1| transcription factor INI [Rattus norvegicus]gi|24415990|ref|NP_081013.1| PHF5A [Mus musculus]gi|14249398|ref|NP_1161 [nrdb_11152004_Chlamydomonas]
  • Tax_Id=10116 PHD finger-like domain-containing protein 5A [EBI-IPI_rat_3.17_05-10-2006_con_reversed.fasta]
  • Tax_Id=10116 PHD finger-like domain protein 5A [EBI-IPI_rat_3.13_12-01-2005_con_reversed.fasta]
  • (NM_138888) transcription factor INI [Rattus norvegicus] [NCBI-RefSeq_human-mouse-rat_na_10-18-2006_con_reversed.fasta]
  • PHD finger-like domain-containing protein 5A (PHD finger-like domain protein 5A) (Splicing factor 3B-associated 14 kDa protein) (SF3b14b) [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • PHD-finger 5A [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • rCG59500 [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • transcription factor INI [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • Tax_Id=10116 PHD FINGER-LIKE DOMAIN PROTEIN 5A [Xentr4_EBI-IPI_human_mouse_rat_Xenopus_tropicalis_laevis_con_reversed.fasta]
  • Tax_Id=10116 Gene_Symbol=Phf5a PHD finger-like domain-containing protein 5A [rat-ipi-250309-contam.fasta]
  • PHD finger-like domain-containing protein 5A OS=Rattus norvegicus GN=Phf5a [011711_HMR.fasta]
  • PHD finger protein 5A OS=Rattus norvegicus GN=Phf5a [011711_HMR.fasta]
  • PHD finger protein 5A OS=Rattus norvegicus GN=Phf5a PE=4 SV=1 [UNIPROT_RAT_07-21-2011_reversed.fasta]
  • Isoform of P83871, PHD finger protein 5A OS=Rattus norvegicus GN=Phf5a PE=1 SV=1 [RAT.fasta.20160308]
    • Organism: Rattus norvegicus
    Length: 110 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    spliceosomal complex [IEA]
    nuclear matrix [UNKNOWN][IEA]
    U2 snRNP [UNKNOWN][ISS]
    [NOT]nucleolus [UNKNOWN]
    Biological Process: RNA splicing [UNKNOWN][IEA]
    positive regulation of transcription, DNA-dependent [IDA]
    positive regulation of transcription [IDA]
    nuclear mRNA splicing, via spliceosome [UNKNOWN][ISS]
    Molecular Function: transcription factor activity [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKHHPDLIF CRKQAGVAIG RLCEKCDGKC VICDSYVRPC TLVRICDECN YGSYQGRCVI  60
   61 CGGPGVSDAY YCKECTIQEK DRDGCPKIVN LGSSKTDLFY ERKKYGFKKR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..110] Pfam 88.657577 No description for PF03660.5 was found. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle