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Protein Overview: PHF5A_RAT

General Information:
Name(s) found: PHF5A_RAT [Swiss-Prot]
Description(s) found:
Found 23 descriptions.
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  • PHD finger-like domain-containing protein 5A OS=Rattus norvegicus GN=Phf5a PE=2 SV=1 [Swiss-Prot]
    • Organism: Rattus norvegicus
    Length: 110 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    spliceosomal complex [IEA]
    nuclear matrix [UNKNOWN][IEA]
    U2 snRNP [UNKNOWN][ISS]
    [NOT]nucleolus [UNKNOWN]
    Biological Process: RNA splicing [UNKNOWN][IEA]
    positive regulation of transcription, DNA-dependent [IDA]
    positive regulation of transcription [IDA]
    nuclear mRNA splicing, via spliceosome [UNKNOWN][ISS]
    Molecular Function: transcription factor activity [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKHHPDLIF CRKQAGVAIG RLCEKCDGKC VICDSYVRPC TLVRICDECN YGSYQGRCVI  60
   61 CGGPGVSDAY YCKECTIQEK DRDGCPKIVN LGSSKTDLFY ERKKYGFKKR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..110] Pfam 88.657577 No description for PF03660.5 was found. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle