Protein Overview: CX6A1_RAT

General Information:
Name(s) found:	CX6A1_RAT [Swiss-Prot]
Description(s) found: SHOW ONLY BEST	gi\|77736544\|ref\|NP_036946.1\| cytochrome c oxidase, subunit VIa, polypeptide 1 [Rattus norvegicus] [NCBI NR] ref\|XP_341095.1\| cytochrome c oxidase, subunit VIa, polypeptide 1 [Rattus norvegicus] [NCBI NR] gi\|149063563\|gb\|EDM13886.1\| cytochrome c oxidase, subunit VIa, polypeptide 1 [Rattus norvegicus] [NCBI NR] gi\|1352174\|sp\|P10818.2\|CX6A1_RAT RecName: Full=Cytochrome c oxidase subunit 6A1, mitochondrial; AltName: Full=Cytochrome c oxidase polypeptide VIa-liver; Flags: Precursor [NCBI NR] Cytochrome c oxidase subunit 6A1, mitochondrial OS=Rattus norvegicus GN=Cox6a1 PE=1 SV=2 [Swiss-Prot] (P10818) Cytochrome c oxidase polypeptide VIa-liver, mitochondrial precursor (EC 1.9.3.1) [Swiss-Prot] Ensembl_locations(Chr-bp):12-43540932 Cytochrome c oxidase polypeptide VIa-liver, mitochondrial precursor [hmr_yeast5_DM3-1_pombe.fasta] cytochrome c oxidase, subunit VIa, polypeptide 1 [HMR_022704-rand.fasta] cytochrome c oxidase, subunit VIa, polypeptide 1 [Rattus norvegicus]gi\|1352174\|sp\|P10818\|COXE_RAT Cytochrome c oxidase polypeptide VIa-liver, mitochondrial precursor [nrdb_11152004_Chlamydomonas] Tax_Id=10116 Cytochrome c oxidase polypeptide VIa-liver, mitochondrial precursor [EBI-IPI_rat_3.17_05-10-2006_con_reversed.fasta] Cytochrome c oxidase polypeptide VIa-liver, mitochondrial precursor [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta] cytochrome c oxidase, subunit VIa, polypeptide 1 [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta] Tax_Id=10116 CYTOCHROME C OXIDASE POLYPEPTIDE VIA-LIVER, MITOCHONDRIAL PRECURSOR [Xentr4_EBI-IPI_human_mouse_rat_Xenopus_tropicalis_laevis_con_reversed.fasta] Tax_Id=10116 Gene_Symbol=Cox6a1 Cytochrome c oxidase polypeptide 6A1, mitochondrial [rat-ipi-250309-contam.fasta] Cytochrome c oxidase subunit 6A1, mitochondrial OS=Rattus norvegicus GN=Cox6a1 [011711_HMR.fasta]
Organism:	Rattus norvegicus
Length:	111 amino acids
Gene Ontology:
Cellular Component:	mitochondrion [UNKNOWN][IEA] membrane [IEA] mitochondrial respiratory chain complex IV [IEA] mitochondrial inner membrane [IEA]
Biological Process:	NONE FOUND
Molecular Function:	cytochrome-c oxidase activity [IEA]

Sequence:
Sequence: [PDR BLAST] [ProtParam]	1 11 21 31 41 51 \| \| \| \| \| \| 1 MASAVLSASR VSGLLGRALP RVGRPMSSGA HGEEGSARIW KALTYFVALP GVGVSMLNVF 60 61 LKSRHEEHER PEFVAYPHLR IRTKPFPWGD GNHTLFHNPH MNPLPTGYED E

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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No microscopy data found in the PDR for this protein.

Protein Structure Data

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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..111]	PSI-BLAST	30.09691	Mitochondrial cytochrome c oxidase subunit VIa

Functions predicted (by domain):

#

Gene Ontology predictions

1

Term	Confidence	Notes
cytochrome-c oxidase activity	12.2317532545955	bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors	12.2317532545955	bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors, oxygen as acceptor	12.2317532545955	bayes_pls_golite062009
heme-copper terminal oxidase activity	11.9189904362651	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	5.77104248101315	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	5.61858135414369	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	5.0189825255034	bayes_pls_golite062009
oxidoreductase activity	4.93709142475202	bayes_pls_golite062009
cation transmembrane transporter activity	4.77145907631723	bayes_pls_golite062009
ion transmembrane transporter activity	4.57436007698077	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	4.16699951799043	bayes_pls_golite062009
substrate-specific transporter activity	3.97113110639524	bayes_pls_golite062009
catalytic activity	0.448769452796145	bayes_pls_golite062009

Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

Philius Transmembrane Prediction:

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.16

Source: Reynolds et al. (2008)

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle